CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMMUG00000005750
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000005750
T38839_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.830
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.830
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.830
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.809
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000007589
RRM
13
82
LFIGRLGFEITDESLRKHSEPWGILKDYVVRRDPKTKSSRGFGFVTYATVEEVDAAMNARPHKLDGRVVE
ENSMMUP00000007589
RRM
104
173
IFVGGIKEDTEEHHLRDYSEQYGKTEVTEIMTDRGSVKKRGFAFIPFDDHDFVDKTVIQKFHTVNGHNCE
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
201 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAA49741
Xenopus laevis
AAA49741
I
0.000
AAA49742
Xenopus laevis
AAA49742
I
0.000
AAA49949
Xenopus laevis
AAA49949
I
0.000
AAA49950
Xenopus laevis
AAA49950
I
0.000
AAH45260
Xenopus laevis
AAH45260
I
0.717
AAH72090
Xenopus laevis
AAH72090
I
0.710
AAI69881
Xenopus laevis
AAI69881
I
0.000
Ame_R011792
Ailuropoda melanoleuca
Ame_R011792
I
0.779
Ame_R015370
Ailuropoda melanoleuca
Ame_R015370
I
0.000
CBF67555
Xenopus laevis
CBF67555
I
0.000
CBF67578
Xenopus laevis
CBF67578
I
0.000
CBF67672
Xenopus laevis
CBF67672
I
0.710
CBU92428
Xenopus laevis
CBU92428
I
0.000
CBU92451
Xenopus laevis
CBU92451
I
0.000
CBU92546
Xenopus laevis
CBU92546
I
0.710
ENSACAG00000007169
Anolis carolinensis
ENSACAG00000007169
I
0.772
HNRNPA3
Anolis carolinensis
ENSACAG00000012234
I
0.000
ROA1_BOVIN
Bos taurus
ENSBTAG00000001553
I
0.779
LOC781499
Bos taurus
ENSBTAG00000021580
I
0.000
LOC785445
Bos taurus
ENSBTAG00000025621
I
0.745
XM_844664.1
Canis familiaris
ENSCAFG00000000687
I
0.789
ENSCAFG00000001973
Canis familiaris
ENSCAFG00000001973
I
0.729
ENSCAFG00000002059
Canis familiaris
ENSCAFG00000002059
I
0.717
XM_543834.2
Canis familiaris
ENSCAFG00000002157
I
0.729
ENSCAFG00000003418
Canis familiaris
ENSCAFG00000003418
I
0.746
ENSCAFG00000003493
Canis familiaris
ENSCAFG00000003493
I
0.715
ENSCAFG00000004202
Canis familiaris
ENSCAFG00000004202
I
0.743
XM_854536.1
Canis familiaris
ENSCAFG00000005046
I
0.752
ENSCAFG00000005164
Canis familiaris
ENSCAFG00000005164
I
0.703
ENSCAFG00000005207
Canis familiaris
ENSCAFG00000005207
I
0.717
ENSCAFG00000005308
Canis familiaris
ENSCAFG00000005308
I
0.717
ENSCAFG00000006036
Canis familiaris
ENSCAFG00000006036
I
0.743
XM_855847.1
Canis familiaris
ENSCAFG00000006327
I
0.724
XM_534786.2
Canis familiaris
ENSCAFG00000006580
I
0.779
XP_541811.1
Canis familiaris
ENSCAFG00000006586
I
0.710
ENSCAFG00000006663
Canis familiaris
ENSCAFG00000006663
I
0.718
ENSCAFG00000006784
Canis familiaris
ENSCAFG00000006784
I
0.759
ENSCAFG00000007198
Canis familiaris
ENSCAFG00000007198
I
0.711
ENSCAFG00000007879
Canis familiaris
ENSCAFG00000007879
I
0.759
ENSCAFG00000007918
Canis familiaris
ENSCAFG00000007918
I
0.000
ENSCAFG00000008301
Canis familiaris
ENSCAFG00000008301
I
0.703
ENSCAFG00000008379
Canis familiaris
ENSCAFG00000008379
I
0.757
ENSCAFG00000009412
Canis familiaris
ENSCAFG00000009412
I
0.000
ENSCAFG00000010153
Canis familiaris
ENSCAFG00000010153
I
0.766
ENSCAFG00000011035
Canis familiaris
ENSCAFG00000011035
I
0.757
ENSCAFG00000013303
Canis familiaris
ENSCAFG00000013303
I
0.743
ENSCAFG00000013497
Canis familiaris
ENSCAFG00000013497
I
0.000
ENSCAFG00000013932
Canis familiaris
ENSCAFG00000013932
I
0.000
ENSCAFG00000014094
Canis familiaris
ENSCAFG00000014094
I
0.000
ENSCAFG00000014691
Canis familiaris
ENSCAFG00000014691
I
0.743
ENSCAFG00000015319
Canis familiaris
ENSCAFG00000015319
I
0.743
XP_848548.1
Canis familiaris
ENSCAFG00000016313
I
0.703
ENSCAFG00000016707
Canis familiaris
ENSCAFG00000016707
I
0.000
ENSCAFG00000017316
Canis familiaris
ENSCAFG00000017316
I
0.768
ENSCAFG00000017494
Canis familiaris
ENSCAFG00000017494
I
0.736
ENSCAFG00000018186
Canis familiaris
ENSCAFG00000018186
I
0.736
ENSCAFG00000019104
Canis familiaris
ENSCAFG00000019104
I
0.729
ENSCAFG00000019118
Canis familiaris
ENSCAFG00000019118
I
0.750
ENSCAFG00000020238
Canis familiaris
ENSCAFG00000020238
I
0.736
XM_852631.1
Canis familiaris
ENSCAFG00000023680
I
0.745
ENSCAFG00000024812
Canis familiaris
ENSCAFG00000024812
I
0.000
ENSCAFG00000024824
Canis familiaris
ENSCAFG00000024824
I
0.708
ENSCAFG00000024951
Canis familiaris
ENSCAFG00000024951
I
0.731
ENSCAFG00000025274
Canis familiaris
ENSCAFG00000025274
I
0.000
ENSCJAG00000000095
Callithrix jacchus
ENSCJAG00000000095
I
0.738
ENSCJAG00000001302
Callithrix jacchus
ENSCJAG00000001302
I
0.000
ENSCJAG00000001353
Callithrix jacchus
ENSCJAG00000001353
I
0.764
ENSCJAG00000001737
Callithrix jacchus
ENSCJAG00000001737
I
0.710
LOC100409067
Callithrix jacchus
ENSCJAG00000003245
I
0.759
LOC100397230
Callithrix jacchus
ENSCJAG00000004031
I
0.772
ENSCJAG00000004902
Callithrix jacchus
ENSCJAG00000004902
I
0.759
ENSCJAG00000005326
Callithrix jacchus
ENSCJAG00000005326
I
0.707
ENSCJAG00000007250
Callithrix jacchus
ENSCJAG00000007250
I
0.724
ENSCJAG00000007639
Callithrix jacchus
ENSCJAG00000007639
I
0.000
ENSCJAG00000008584
Callithrix jacchus
ENSCJAG00000008584
I
0.000
LOC100413454
Callithrix jacchus
ENSCJAG00000009030
I
0.772
ENSCJAG00000009723
Callithrix jacchus
ENSCJAG00000009723
I
0.724
ENSCJAG00000010169
Callithrix jacchus
ENSCJAG00000010169
I
0.738
LOC100397230
Callithrix jacchus
ENSCJAG00000014791
I
0.724
ENSCJAG00000016375
Callithrix jacchus
ENSCJAG00000016375
I
0.731
ENSCJAG00000017130
Callithrix jacchus
ENSCJAG00000017130
I
0.703
LOC100397230
Callithrix jacchus
ENSCJAG00000018864
I
0.779
ENSCJAG00000019479
Callithrix jacchus
ENSCJAG00000019479
I
0.779
ENSCJAG00000020672
Callithrix jacchus
ENSCJAG00000020672
I
0.717
LOC100411573
Callithrix jacchus
ENSCJAG00000023383
I
0.000
LOC100410389
Callithrix jacchus
ENSCJAG00000023392
I
0.752
ENSCJAG00000031552
Callithrix jacchus
ENSCJAG00000031552
I
0.759
ENSCJAG00000032417
Callithrix jacchus
ENSCJAG00000032417
I
0.724
ENSCJAG00000032970
Callithrix jacchus
ENSCJAG00000032970
I
0.724
ENSCJAG00000033784
Callithrix jacchus
ENSCJAG00000033784
I
0.717
ENSCJAG00000033856
Callithrix jacchus
ENSCJAG00000033856
I
0.779
ENSCJAG00000035202
Callithrix jacchus
ENSCJAG00000035202
I
0.731
ENSCPOG00000004251
Cavia porcellus
ENSCPOG00000004251
I
0.000
HNRNPA3
Cavia porcellus
ENSCPOG00000011301
I
0.000
ENSCPOG00000021077
Cavia porcellus
ENSCPOG00000021077
I
0.759
zgc:66127
Danio rerio
ENSDARG00000011020
I
0.000
hnrnpa1
Danio rerio
ENSDARG00000036675
I
0.000
hnrnpa3
Danio rerio
ENSDARG00000059351
I
0.000
ENSDNOG00000009228
Dasypus novemcinctus
ENSDNOG00000009228
I
0.779
HNRNPA3
Dasypus novemcinctus
ENSDNOG00000019022
I
0.000
Hnrnpa1
Dipodomys ordii
ENSDORG00000010628
I
0.720
LOC100054206
Equus caballus
ENSECAG00000006699
I
0.771
Q6DTK6_HORSE
Equus caballus
ENSECAG00000008676
I
0.779
LOC100066794
Equus caballus
ENSECAG00000023237
I
0.000
ENSEEUG00000000494
Erinaceus europaeus
ENSEEUG00000000494
I
0.772
ENSEEUG00000006130
Erinaceus europaeus
ENSEEUG00000006130
I
0.766
ENSEEUG00000009941
Erinaceus europaeus
ENSEEUG00000009941
I
0.000
ENSEEUG00000011837
Erinaceus europaeus
ENSEEUG00000011837
I
0.000
ENSETEG00000001872
Echinops telfairi
ENSETEG00000001872
I
0.000
ENSETEG00000015332
Echinops telfairi
ENSETEG00000015332
I
0.710
ENSFCAG00000010150
Felis catus
ENSFCAG00000010150
I
0.779
HNRNPA3
Felis catus
ENSFCAG00000012146
I
0.000
HNRNPA1
Homo sapiens
ENSG00000135486
D
0.779
HNRNPA1L2
Homo sapiens
ENSG00000139675
D
0.759
HNRNPA3
Homo sapiens
ENSG00000170144
I
0.000
ENSG00000215492
Homo sapiens
ENSG00000215492
I
0.779
ENSG00000231942
Homo sapiens
ENSG00000231942
I
0.743
HNRNPA3
Gasterosteus aculeatus
ENSGACG00000004477
I
0.000
ENSGACG00000009435
Gasterosteus aculeatus
ENSGACG00000009435
I
0.703
HNRPA3
Gallus gallus
ENSGALG00000009250
I
0.000
HNRNPA1
Gorilla gorilla
ENSGGOG00000003040
I
0.779
HNRNPA3
Gorilla gorilla
ENSGGOG00000006130
I
0.000
ENSGGOG00000022020
Gorilla gorilla
ENSGGOG00000022020
I
0.000
ENSGGOG00000025265
Gorilla gorilla
ENSGGOG00000025265
I
0.703
ENSGGOG00000025381
Gorilla gorilla
ENSGGOG00000025381
I
0.786
ENSGGOG00000025446
Gorilla gorilla
ENSGGOG00000025446
I
0.000
ENSGGOG00000025827
Gorilla gorilla
ENSGGOG00000025827
I
0.738
ENSGGOG00000027879
Gorilla gorilla
ENSGGOG00000027879
I
0.710
ENSLAFG00000026657
Loxodonta africana
ENSLAFG00000026657
I
0.752
ENSLAFG00000029171
Loxodonta africana
ENSLAFG00000029171
I
0.000
ENSLAFG00000029587
Loxodonta africana
ENSLAFG00000029587
I
0.772
ENSLAFG00000030769
Loxodonta africana
ENSLAFG00000030769
I
0.745
HNRNPA3
Macropus eugenii
ENSMEUG00000013622
I
0.000
ENSMGAG00000007630
Meleagris gallopavo
ENSMGAG00000007630
I
0.740
HNRNPA3
Meleagris gallopavo
ENSMGAG00000009565
I
0.000
ENSMICG00000009289
Microcebus murinus
ENSMICG00000009289
I
0.729
ENSMLUG00000000648
Myotis lucifugus
ENSMLUG00000000648
I
0.779
ENSMLUG00000000788
Myotis lucifugus
ENSMLUG00000000788
I
0.750
ENSMLUG00000003232
Myotis lucifugus
ENSMLUG00000003232
I
0.779
HNRNPA3
Myotis lucifugus
ENSMLUG00000003906
I
0.000
ENSMMUG00000001858
Macaca mulatta
ENSMMUG00000001858
I
0.000
ENSMMUG00000004182
Macaca mulatta
ENSMMUG00000004182
I
0.745
ENSMMUG00000005993
Macaca mulatta
ENSMMUG00000005993
I
0.000
ENSMMUG00000007695
Macaca mulatta
ENSMMUG00000007695
I
0.717
LOC710473
Macaca mulatta
ENSMMUG00000007887
I
0.779
LOC710473
Macaca mulatta
ENSMMUG00000007928
I
0.766
ENSMMUG00000008337
Macaca mulatta
ENSMMUG00000008337
I
0.750
XR_011984.1
Macaca mulatta
ENSMMUG00000011640
I
0.743
LOC710473
Macaca mulatta
ENSMMUG00000012989
I
0.779
XR_010472.1
Macaca mulatta
ENSMMUG00000012991
I
0.750
ENSMMUG00000013424
Macaca mulatta
ENSMMUG00000013424
I
0.718
ENSMMUG00000018397
Macaca mulatta
ENSMMUG00000018397
I
0.000
ENSMMUG00000022448
Macaca mulatta
ENSMMUG00000022448
I
0.780
LOC710473
Macaca mulatta
ENSMMUG00000029402
I
0.772
ROA1_MACMU
Macaca mulatta
ENSMMUG00000031613
I
0.772
XM_001106745.1
Macaca mulatta
ENSMMUG00000031809
I
0.736
ENSMMUG00000031948
Macaca mulatta
ENSMMUG00000031948
I
0.738
ENSMODG00000006291
Monodelphis domestica
ENSMODG00000006291
I
0.733
HNRNPA3
Monodelphis domestica
ENSMODG00000019803
I
0.000
ENSMODG00000023422
Monodelphis domestica
ENSMODG00000023422
I
0.708
ENSMUSG00000021927
Mus musculus
ENSMUSG00000021927
I
0.766
Hnrnpa1
Mus musculus
ENSMUSG00000046434
I
0.779
Hnrnpa3
Mus musculus
ENSMUSG00000059005
I
0.000
Gm8991
Mus musculus
ENSMUSG00000059179
I
0.000
HNRNPA3
Oryctolagus cuniculus
ENSOCUG00000002743
I
0.000
ENSOCUG00000010985
Oryctolagus cuniculus
ENSOCUG00000010985
I
0.766
ENSOCUG00000013350
Oryctolagus cuniculus
ENSOCUG00000013350
I
0.779
ENSOCUG00000021006
Oryctolagus cuniculus
ENSOCUG00000021006
I
0.752
ENSOCUG00000021007
Oryctolagus cuniculus
ENSOCUG00000021007
I
0.779
ENSOCUG00000022568
Oryctolagus cuniculus
ENSOCUG00000022568
I
0.772
ENSOCUG00000022627
Oryctolagus cuniculus
ENSOCUG00000022627
I
0.724
ENSOCUG00000022668
Oryctolagus cuniculus
ENSOCUG00000022668
I
0.759
ENSOCUG00000023322
Oryctolagus cuniculus
ENSOCUG00000023322
I
0.766
ENSOCUG00000023444
Oryctolagus cuniculus
ENSOCUG00000023444
I
0.772
ENSOCUG00000023674
Oryctolagus cuniculus
ENSOCUG00000023674
I
0.779
ENSOCUG00000028124
Oryctolagus cuniculus
ENSOCUG00000028124
I
0.772
ENSOGAG00000009945
Otolemur garnettii
ENSOGAG00000009945
I
0.759
ENSOGAG00000017179
Otolemur garnettii
ENSOGAG00000017179
I
0.736
ENSOPRG00000006107
Ochotona princeps
ENSOPRG00000006107
I
0.772
ENSORLG00000008001
Oryzias latipes
ENSORLG00000008001
I
0.000
HNRNPA3
Oryzias latipes
ENSORLG00000017561
I
0.000
ENSPCAG00000001867
Procavia capensis
ENSPCAG00000001867
I
0.000
ENSPPYG00000001012
Pongo pygmaeus
ENSPPYG00000001012
I
0.000
ENSPPYG00000012967
Pongo pygmaeus
ENSPPYG00000012967
I
0.000
ENSPPYG00000016683
Pongo pygmaeus
ENSPPYG00000016683
I
0.000
ENSPPYG00000017853
Pongo pygmaeus
ENSPPYG00000017853
I
0.772
ROA1_PANTR
Pan troglodytes
ENSPTRG00000005035
I
0.779
HNRNPA3
Pan troglodytes
ENSPTRG00000012676
I
0.000
ENSPTRG00000018253
Pan troglodytes
ENSPTRG00000018253
I
0.000
ROA1_PANTR
Pan troglodytes
ENSPTRG00000028756
I
0.779
ROA1_PANTR
Pan troglodytes
ENSPTRG00000031363
I
0.779
HNRNPA1L2
Pan troglodytes
ENSPTRG00000032520
I
0.779
ENSPVAG00000000322
Pteropus vampyrus
ENSPVAG00000000322
I
0.779
HNRNPA3
Pteropus vampyrus
ENSPVAG00000010380
I
0.000
LOC100360986
Rattus norvegicus
ENSRNOG00000001556
I
0.000
D3ZNE1_RAT
Rattus norvegicus
ENSRNOG00000005671
I
0.000
ENSRNOG00000005951
Rattus norvegicus
ENSRNOG00000005951
I
0.731
ENSRNOG00000011100
Rattus norvegicus
ENSRNOG00000011100
I
0.000
ENSRNOG00000013650
Rattus norvegicus
ENSRNOG00000013650
I
0.000
ENSRNOG00000021280
Rattus norvegicus
ENSRNOG00000021280
I
0.000
D4A2D2_RAT
Rattus norvegicus
ENSRNOG00000021986
I
0.745
ENSRNOG00000023438
Rattus norvegicus
ENSRNOG00000023438
I
0.000
D4AD23_RAT
Rattus norvegicus
ENSRNOG00000025891
I
0.750
ROA3_RAT
Rattus norvegicus
ENSRNOG00000027001
I
0.000
D3ZX95_RAT
Rattus norvegicus
ENSRNOG00000027006
I
0.000
D4A491_RAT
Rattus norvegicus
ENSRNOG00000029531
I
0.759
ENSRNOG00000030901
Rattus norvegicus
ENSRNOG00000030901
I
0.000
D3ZTB7_RAT
Rattus norvegicus
ENSRNOG00000031608
I
0.000
D4ABW2_RAT
Rattus norvegicus
ENSRNOG00000032168
I
0.739
ENSRNOG00000033182
Rattus norvegicus
ENSRNOG00000033182
I
0.738
Hnrnpa1
Rattus norvegicus
ENSRNOG00000036839
I
0.779
D3ZXA3_RAT
Rattus norvegicus
ENSRNOG00000038905
I
0.000
ENSRNOG00000039436
Rattus norvegicus
ENSRNOG00000039436
I
0.759
ENSRNOG00000042093
Rattus norvegicus
ENSRNOG00000042093
I
0.000
HNRNPA3
Sorex araneus
ENSSARG00000007605
I
0.000
ENSSARG00000008882
Sorex araneus
ENSSARG00000008882
I
0.000
ENSSARG00000008946
Sorex araneus
ENSSARG00000008946
I
0.720
ENSSARG00000010620
Sorex araneus
ENSSARG00000010620
I
0.000
ENSSSCG00000000288
Sus scrofa
ENSSSCG00000000288
I
0.779
ENSSSCG00000005428
Sus scrofa
ENSSSCG00000005428
I
0.000
HNRNPA3
Sus scrofa
ENSSSCG00000015988
I
0.000
ENSSTOG00000015259
Spermophilus tridecemlineatus
ENSSTOG00000015259
I
0.710
ENSTBEG00000008238
Tupaia belangeri
ENSTBEG00000008238
I
0.779
ENSTBEG00000012511
Tupaia belangeri
ENSTBEG00000012511
I
0.731
ENSTBEG00000016272
Tupaia belangeri
ENSTBEG00000016272
I
0.745
HNRNPA3
Taeniopygia guttata
ENSTGUG00000008996
I
0.000
ENSTNIG00000015047
Tetraodon nigroviridis
ENSTNIG00000015047
I
0.000
HNRNPA3
Tetraodon nigroviridis
ENSTNIG00000016958
I
0.000
Q1KKU4_FUGRU
Takifugu rubripes
ENSTRUG00000002190
I
0.000
ENSTTRG00000004505
Tursiops truncatus
ENSTTRG00000004505
I
0.779
HNRNPA3
Tursiops truncatus
ENSTTRG00000014225
I
0.000
hnrnpa3
Xenopus tropicalis
ENSXETG00000001806
I
0.000
hnrnpa1
Xenopus tropicalis
ENSXETG00000021277
I
0.717
P17130
Xenopus laevis
P17130
I
0.000
P51968
Xenopus laevis
P51968
I
0.000
P51992
Xenopus laevis
P51992
I
0.000