AT5G55550 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT5G55550-TAIR-G T32849_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G55550.1-P RRM 8 76
AT5G55550.1-P RRM 112 181
AT5G55550.2-P RRM 8 76
AT5G55550.2-P RRM 112 181
AT5G55550.3-P RRM 8 76
AT5G55550.3-P RRM 112 181

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000635 Ricinus communis 27613.m000635 N 0.835
29608.m000212 Ricinus communis 29608.m000212 N 0.770
30008.m000830 Ricinus communis 30008.m000830 N 0.705
30048.m000319 Ricinus communis 30048.m000319 N 0.799
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.770
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.899
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.755
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.820
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.770
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.784
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.835
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.794
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.763
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.784
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.793
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.791
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.799
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.799
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.784
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.835
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.719
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.784
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.842
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.843
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.806
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.835
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.712
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.827
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.791
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.770
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.842
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.791
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.842
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.791
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.849
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.863
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.770
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.763
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.755
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.748
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.755
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.719
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.799
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.827
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.727
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.770
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.807
MDP0000188788 Malus x domestica MDP0000188788 N 0.827
MDP0000204698 Malus x domestica MDP0000204698 N 0.835
MDP0000320618 Malus x domestica MDP0000320618 N 0.777
MDP0000609551 Malus x domestica MDP0000609551 N 0.827
MDP0000642684 Malus x domestica MDP0000642684 N 0.770
MDP0000907782 Malus x domestica MDP0000907782 N 0.777
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.820
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.849
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.777
mgf004139m Mimulus guttatus mgf004139m N 0.770
mgf009385m Mimulus guttatus mgf009385m N 0.791
mgf009486m Mimulus guttatus mgf009486m N 0.750
mgf012147m Mimulus guttatus mgf012147m N 0.799
PK13457.1 Cannabis sativa PK13457.1 N 0.791
PK25912.1 Cannabis sativa PK25912.1 N 0.863
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.791
ppa004834m Prunus persica ppa004834m N 0.842
ppa005119m Prunus persica ppa005119m N 0.784
ppa005122m Prunus persica ppa005122m N 0.842
ppa005132m Prunus persica ppa005132m N 0.784
ppa005979m Prunus persica ppa005979m N 0.705
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.705
SB02G005620 Sorghum bicolor Sb02g005620 N 0.777
SB02G005670 Sorghum bicolor Sb02g005670 N 0.777
SB02G037690 Sorghum bicolor Sb02g037690 N 0.763
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.993
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.755
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.899
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.770