Medtr8g146650 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr8g146650 T54619_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr8g146650.1 RRM 76 143
Medtr8g146650.1 RRM 169 240
Medtr8g146650.1 RRM 276 340
Medtr8g146650.2 RRM 76 143
Medtr8g146650.2 RRM 169 240
Medtr8g146650.3 RRM 76 143
Medtr8g146650.3 RRM 169 240

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29666.m001436 Ricinus communis 29666.m001436 I 0.731
29801.m003218 Ricinus communis 29801.m003218 I 0.000
29842.m003612 Ricinus communis 29842.m003612 N 0.758
30169.m006434 Ricinus communis 30169.m006434 I 0.000
30170.m014217 Ricinus communis 30170.m014217 I 0.000
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.712
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.754
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.705
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.763
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.000
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.000
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.707
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.729
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.729
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.000
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.000
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.000
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.712
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.726
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.726
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.726
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.726
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.726
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.725
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.725
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.000
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.893
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.873
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.830
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.000
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.000
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.000
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.700
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.878
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.888
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.888
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.878
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.702
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.736
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.000
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.000
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.000
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.000
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.000
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.707
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.725
MDP0000223369 Malus x domestica MDP0000223369 N 0.707
MDP0000294628 Malus x domestica MDP0000294628 I 0.830
MDP0000614064 Malus x domestica MDP0000614064 N 0.707
mgf010468m Mimulus guttatus mgf010468m I 0.760
mgf014417m Mimulus guttatus mgf014417m N 0.740
PK10695.1 Cannabis sativa PK10695.1 I 0.816
ppa005661m Prunus persica ppa005661m I 0.000
ppa006577m Prunus persica ppa006577m I 0.702
ppa006617m Prunus persica ppa006617m N 0.791
SB01G016170 Sorghum bicolor Sb01g016170 N 0.709
SB06G029180 Sorghum bicolor Sb06g029180 N 0.000
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.000
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.754