CELF3 (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000159409 T37296_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.829
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.819
aret_CONSTRUCT
M229_0.6 		RNAcompete CONSTRUCTS UKUGUGU RNAcompete
Ray et al.(2013)
RNCMPT00270 		0.732
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.716
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000290583 RRM 9 78
ENSP00000290583 RRM 97 165
ENSP00000290583 RRM 382 452
ENSP00000290585 RRM 9 78
ENSP00000290585 RRM 97 165
ENSP00000290585 RRM 332 402
ENSP00000357826 RRM 13 79
ENSP00000357826 RRM 97 165
ENSP00000357826 RRM 382 452
ENSP00000376470 RRM 177 247
ENSP00000390053 RRM 9 78
ENSP00000390053 RRM 97 165
ENSP00000390053 RRM 381 451
ENSP00000402503 RRM 14 80
ENSP00000402503 RRM 98 166
ENSP00000402503 RRM 383 453
ENSP00000413208 RRM 15 54
ENSP00000413208 RRM 73 141
ENSP00000413208 RRM 358 428
ENSP00000416517 RRM 9 78
ENSP00000416517 RRM 96 164
ENSP00000416517 RRM 381 451

Links

Other RRM family RBPs
Other Homo sapiens RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
136083 Helobdella robusta 136083 I 0.746
AAA81375 Xenopus laevis AAA81375 I 0.924
AAEL003979 Aedes aegypti AAEL003979 I 0.873
AAH46942 Xenopus laevis AAH46942 I 0.914
AAH57704 Xenopus laevis AAH57704 I 0.924
AAH72134 Xenopus laevis AAH72134 I 0.924
ACH69784 Xenopus laevis ACH69784 I 0.720
ACH69785 Xenopus laevis ACH69785 I 0.805
amel4_ncbi_hmm2201 Apis mellifera amel4_ncbi_hmm2201 I 0.761
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 1.000
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.819
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.819
BGIBMGA005893 Bombyx mori BGIBMGA005893 I 0.873
Bm1_27610 Brugia malayi Bm1_27610 I 0.776
unc-75 Caenorhabditis elegans C17D12.2 D 0.716
CBG15358 Caenorhabditis briggsae CBG15358 I 0.720
CRE09771 Caenorhabditis remanei CRE09771 I 0.720
CELF6 Anolis carolinensis ENSACAG00000006079 I 0.887
CELF6 Bos taurus ENSBTAG00000014092 I 0.819
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 1.000
CELF5 Bos taurus ENSBTAG00000021774 I 0.757
CELF3 Canis familiaris ENSCAFG00000012794 I 1.000
CELF5 Canis familiaris ENSCAFG00000019263 I 0.772
CELF3 Callithrix jacchus ENSCJAG00000007857 I 1.000
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.814
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.831
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.711
CELF3 Cavia porcellus ENSCPOG00000003539 I 1.000
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.783
CELF3 Danio rerio ENSDARG00000006983 I 0.871
celf3 Danio rerio ENSDARG00000034668 I 0.895
celf4 Danio rerio ENSDARG00000070045 I 0.778
celf5 Danio rerio ENSDARG00000071375 I 0.824
CELF3 Dasypus novemcinctus ENSDNOG00000011384 N 0.837
Celf3 Dipodomys ordii ENSDORG00000002488 N 0.751
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.752
Celf5 Dipodomys ordii ENSDORG00000005915 I 0.744
CELF3 Equus caballus ENSECAG00000020365 I 1.000
CELF3 Erinaceus europaeus ENSEEUG00000010622 N 0.773
CELF5 Echinops telfairi ENSETEG00000016221 I 0.750
CELF6 Felis catus ENSFCAG00000016249 I 0.819
BRUNOL4 Homo sapiens ENSG00000101489 D 0.711
BRUNOL6 Homo sapiens ENSG00000140488 D 0.845
BRUNOL5 Homo sapiens ENSG00000161082 D 0.829
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.910
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.919
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.711
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.819
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 1.000
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.802
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.810
CELF3 Loxodonta africana ENSLAFG00000030147 I 1.000
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.767
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.781
CELF3 Microcebus murinus ENSMICG00000010644 N 0.939
HEXA Macaca mulatta ENSMMUG00000010687 I 0.845
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.859
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.919
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.838
CELF3 Monodelphis domestica ENSMODG00000018897 I 1.000
Celf4 Mus musculus ENSMUSG00000024268 I 0.805
Celf3 Mus musculus ENSMUSG00000028137 I 1.000
Celf6 Mus musculus ENSMUSG00000032297 I 0.824
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.887
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 1.000
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.733
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.810
CELF5 Otolemur garnettii ENSOGAG00000014161 I 0.750
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.986
CELF3 Oryzias latipes ENSORLG00000002630 I 0.787
CELF5 Oryzias latipes ENSORLG00000004600 I 0.814
CELF4 Oryzias latipes ENSORLG00000008913 I 0.795
CELF3 Oryzias latipes ENSORLG00000010447 I 0.881
CELF3 Procavia capensis ENSPCAG00000001623 I 0.986
CELF5 Procavia capensis ENSPCAG00000002170 I 0.751
ENSPPYG00000000859 Pongo pygmaeus ENSPPYG00000000859 N 0.712
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.814
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.716
CELF3 Pan troglodytes ENSPTRG00000001293 I 1.000
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.805
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.845
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.819
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.711
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.767
CELF3 Pteropus vampyrus ENSPVAG00000015012 N 0.846
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.824
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 1.000
CELF6 Sus scrofa ENSSSCG00000001928 I 0.819
CELF3 Sus scrofa ENSSSCG00000006618 I 1.000
CELF5 Sus scrofa ENSSSCG00000013476 I 0.762
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.767
CELF3 Tetraodon nigroviridis ENSTNIG00000001919 I 0.944
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.914
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.856
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.895
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.781
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.767
CELF3 Tursiops truncatus ENSTTRG00000009835 N 0.846
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.706
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.795
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.814
ENSXETG00000021745 Xenopus tropicalis ENSXETG00000021745 I 0.958
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.814
e_gw.982.9.1 Nematostella vectensis e_gw.982.9.1 I 0.746
GF19661 Drosophila ananassae FBgn0096668 I 0.718
GG23781 Drosophila erecta FBgn0115920 I 0.718
GI17947 Drosophila mojavensis FBgn0140687 I 0.704
GM26796 Drosophila sechellia FBgn0181649 I 0.718
GD23834 Drosophila simulans FBgn0195204 I 0.718
fgenesh2_pm.scaffold_186000008 Branchiostoma floridae fgenesh2_pm.scaffold_186000008 I 0.901
gw1.77.52.1 Daphnia pulex gw1.77.52.1 I 0.873
ISCW008885 Ixodes scapularis ISCW008885 I 0.775
ISCW010799 Ixodes scapularis ISCW010799 I 0.887
NCBI_GNO_268900001 Daphnia pulex NCBI_GNO_268900001 I 0.873
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.914
Q91579 Xenopus laevis Q91579 I 0.924
SNAPOd2T00007754001 Oikopleura dioica SNAPOd2T00007754001 I 0.761
WUBG_04928 Wuchereria bancrofti WUBG_04928 I 0.859
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.726
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.726