pabpc1l (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000022831 T42947_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.798
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.798
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.798
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.770
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.745
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000049382 RRM 13 83
ENSXETP00000049382 RRM 101 169
ENSXETP00000049382 RRM 193 261
ENSXETP00000049382 RRM 295 363

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA60936 Xenopus laevis AAA60936 I 0.810
AAH52100 Xenopus laevis AAH52100 I 0.814
AAH71118 Xenopus laevis AAH71118 I 0.928
AAH72110 Xenopus laevis AAH72110 I 0.821
AAH73435 Xenopus laevis AAH73435 I 0.799
AAH80020 Xenopus laevis AAH80020 I 0.939
AAI08463 Xenopus laevis AAI08463 I 0.821
AAK29408 Xenopus laevis AAK29408 I 0.939
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.714
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.714
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.714
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.803
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.814
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.728
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.710
CAA40721 Xenopus laevis CAA40721 I 0.814
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.742
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.871
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.824
PABPC1L Bos taurus ENSBTAG00000016849 I 0.824
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.792
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.821
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.792
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.814
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.716
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.789
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.821
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.799
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.792
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.792
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.792
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.710
pabpc1l Danio rerio ENSDARG00000002597 I 0.824
pabpc1a Danio rerio ENSDARG00000017219 I 0.810
pabpc1b Danio rerio ENSDARG00000021140 I 0.804
pabpc4 Danio rerio ENSDARG00000059259 I 0.799
LOC100054235 Equus caballus ENSECAG00000009396 I 0.792
LOC100056021 Equus caballus ENSECAG00000020699 I 0.703
LOC100070836 Equus caballus ENSECAG00000022681 I 0.814
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.792
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.785
PABPC1 Homo sapiens ENSG00000070756 D 0.821
PABPC4 Homo sapiens ENSG00000090621 D 0.792
PABPC1L Homo sapiens ENSG00000101104 I 0.806
PABPC3 Homo sapiens ENSG00000151846 D 0.763
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.839
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.814
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.810
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.789
PABPC4 Gallus gallus ENSGALG00000003800 I 0.799
PABPC1L Gallus gallus ENSGALG00000004123 I 0.892
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.792
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.806
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.792
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.806
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.821
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.832
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.889
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.792
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.803
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.767
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.792
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.810
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.821
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.774
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.818
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.738
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.846
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.803
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.786
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.785
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.824
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.771
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.774
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.763
Gm10110 Mus musculus ENSMUSG00000062093 I 0.789
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.824
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.792
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.789
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.817
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.821
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.821
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.821
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.803
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.792
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.821
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.820
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.792
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.778
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.710
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.792
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.781
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.806
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.821
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.792
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.810
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.817
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.767
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.803
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.821
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.824
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.767
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.781
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.799
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.781
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.778
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.792
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.821
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.814
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.728
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.796
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.885
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.824
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.810
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.782
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.789
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.767
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.806
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.799
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.824
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.817
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.799
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.789
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.821
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.781
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.824
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.738
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.710
ISCW014211 Ixodes scapularis ISCW014211 I 0.701
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.703
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.703
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.703
P20965 Xenopus laevis P20965 I 0.814
PHUM617090 Pediculus humanus PHUM617090 I 0.703
Q6GR16 Xenopus laevis Q6GR16 I 0.928
Q6IP09 Xenopus laevis Q6IP09 I 0.821
Q98SP8 Xenopus laevis Q98SP8 I 0.939