cassava12077.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava12077.valid.m1 T49095_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava12077.valid.m1 RRM 8 76
cassava12077.valid.m1 RRM 109 178

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005132m Prunus persica ppa005132m N 0.892
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.820
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.820
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.806
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.813
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.827
mgf012147m Mimulus guttatus mgf012147m N 0.871
mgf009486m Mimulus guttatus mgf009486m N 0.850
mgf009385m Mimulus guttatus mgf009385m N 0.878
mgf004139m Mimulus guttatus mgf004139m N 0.842
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.755
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.849
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.835
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.885
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.835
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.892
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.842
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.719
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.935
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.842
ppa005122m Prunus persica ppa005122m N 0.871
ppa005119m Prunus persica ppa005119m N 0.885
ppa004834m Prunus persica ppa004834m N 0.871
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.741
MDP0000907782 Malus x domestica MDP0000907782 N 0.871
MDP0000642684 Malus x domestica MDP0000642684 N 0.863
MDP0000609551 Malus x domestica MDP0000609551 N 0.871
MDP0000320618 Malus x domestica MDP0000320618 N 0.878
MDP0000204698 Malus x domestica MDP0000204698 N 0.878
MDP0000188788 Malus x domestica MDP0000188788 N 0.871
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.745
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.892
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.827
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.821
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.813
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.878
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.791
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.719
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.856
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.871
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.871
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.813
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.885
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.892
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.806
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.806
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.835
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.864
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.806
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.813
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.799
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.842
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.806
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.835
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.835
PK25912.1 Cannabis sativa PK25912.1 N 0.885
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.892
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.928
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.835
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.856
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.957
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.849
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.986
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 1.000
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.799
30048.m000319 Ricinus communis 30048.m000319 N 0.957
29608.m000212 Ricinus communis 29608.m000212 N 0.885
27613.m000635 Ricinus communis 27613.m000635 N 0.849
SB05G025410 Sorghum bicolor Sb05g025410 N 0.727
SB02G037690 Sorghum bicolor Sb02g037690 N 0.813
SB02G005670 Sorghum bicolor Sb02g005670 N 0.827
SB02G005620 Sorghum bicolor Sb02g005620 N 0.827
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.914
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.851
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.863
PK13457.1 Cannabis sativa PK13457.1 N 0.906