cassava37001.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava37001.valid.m1 T49350_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava37001.valid.m1 RRM 77 147
cassava37001.valid.m1 RRM 170 241
cassava37001.valid.m1 RRM 277 341

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.779
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.731
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 1.000
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 1.000
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 1.000
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.702
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.731
29801.m003218 Ricinus communis 29801.m003218 I 0.707
29666.m001436 Ricinus communis 29666.m001436 I 0.894
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.712
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.774
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.712
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.784
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.774
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.702
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.702
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.726
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.769
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.769
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.779
mgf010468m Mimulus guttatus mgf010468m I 0.784
SB01G045570 Sorghum bicolor Sb01g045570 I 0.707
ppa006577m Prunus persica ppa006577m I 0.827
ppa005903m Prunus persica ppa005903m I 0.707
MDP0000294628 Malus x domestica MDP0000294628 I 0.764
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 1.000
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.760
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.702
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.721
PK10695.1 Cannabis sativa PK10695.1 I 0.774
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.712
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.702
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.880
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.938
ppa006617m Prunus persica ppa006617m N 0.736
mgf014417m Mimulus guttatus mgf014417m N 0.769
MDP0000614064 Malus x domestica MDP0000614064 N 0.827
MDP0000223369 Malus x domestica MDP0000223369 N 0.822
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.716
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.736
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.716
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.726
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.726
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.764
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.745
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.716
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.731
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.707
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.726
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.736
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.726
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.716
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.726
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.745
SB01G016170 Sorghum bicolor Sb01g016170 N 0.716
SB06G029180 Sorghum bicolor Sb06g029180 N 0.707
29842.m003612 Ricinus communis 29842.m003612 N 0.760
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.702
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.726
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.736