ENSCJAG00000001302 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000001302 T35465_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.858
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.858
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.858
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.837
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002283 RRM 16 84
ENSCJAP00000002283 RRM 106 175

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

218 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6MKC0_CALJA Callithrix jacchus ENSCJAG00000016492 N 0.000
Ame_R012775 Ailuropoda melanoleuca Ame_R012775 N 0.000
Ame_R012777 Ailuropoda melanoleuca Ame_R012777 N 0.000
CABZ01077452.1 Danio rerio ENSDARG00000075165 N 0.000
ENSPPYG00000012165 Pongo pygmaeus ENSPPYG00000012165 N 0.000
ENSTNIG00000016608 Tetraodon nigroviridis ENSTNIG00000016608 N 0.000
ENSTRUG00000012901 Takifugu rubripes ENSTRUG00000012901 N 0.000
Q17QY2_BOVIN Bos taurus ENSBTAG00000015965 N 0.000
ZC3H4 Oryzias latipes ENSORLG00000011179 N 0.000
ZC3H6 Pan troglodytes ENSPTRG00000012363 N 0.000
ZC3H6 Procavia capensis ENSPCAG00000015468 N 0.000
ZC3H6 Otolemur garnettii ENSOGAG00000002556 N 0.000
ZC3H6 Ornithorhynchus anatinus ENSOANG00000012054 N 0.000
ZC3H6 Oryctolagus cuniculus ENSOCUG00000011125 N 0.000
ZC3H6 Ochotona princeps ENSOPRG00000012717 N 0.000
ZC3H6 Pteropus vampyrus ENSPVAG00000013728 N 0.000
Zc3h6 Rattus norvegicus ENSRNOG00000026277 N 0.000
ZC3H6 Sorex araneus ENSSARG00000001035 N 0.000
zc3h6 Xenopus tropicalis ENSXETG00000013762 N 0.000
ZC3H6 Vicugna pacos ENSVPAG00000005912 N 0.000
ZC3H6 Tursiops truncatus ENSTTRG00000013154 N 0.000
ZC3H6 Tarsius syrichta ENSTSYG00000006672 N 0.000
ZC3H6 Anolis carolinensis ENSACAG00000005815 N 0.000
ZC3H6 Tupaia belangeri ENSTBEG00000016232 N 0.000
ZC3H6 Spermophilus tridecemlineatus ENSSTOG00000008120 N 0.000
ZC3H6 Sus scrofa ENSSSCG00000008096 N 0.000
Zc3h6 Mus musculus ENSMUSG00000042851 N 0.000
Zc3h6 Dipodomys ordii ENSDORG00000013967 N 0.000
ZC3H6 Homo sapiens ENSG00000188177 N 0.000
ZC3H6 Callithrix jacchus ENSCJAG00000016479 N 0.000
ZC3H6 Gallus gallus ENSGALG00000008269 N 0.000
ZC3H6 Gorilla gorilla ENSGGOG00000001665 N 0.000
ZC3H6 Dasypus novemcinctus ENSDNOG00000000253 N 0.000
ZC3H6 Canis familiaris ENSCAFG00000007160 N 0.000
ZC3H6 Loxodonta africana ENSLAFG00000001151 N 0.000
ZC3H6 Meleagris gallopavo ENSMGAG00000003025 N 0.000
ZC3H6 Bos taurus ENSBTAG00000020646 N 0.000
ZC3H6 Macaca mulatta ENSMMUG00000016430 N 0.000
ZC3H6 Monodelphis domestica ENSMODG00000006612 N 0.000
ZC3H6 Cavia porcellus ENSCPOG00000003445 N 0.000
ZC3H8 Taeniopygia guttata ENSTGUG00000007468 N 0.000
ZC3H8 Dasypus novemcinctus ENSDNOG00000018056 N 0.000
ZC3H8 Choloepus hoffmanni ENSCHOG00000010391 N 0.000
ZC3H8 Vicugna pacos ENSVPAG00000005911 N 0.000
ZC3H8 Canis familiaris ENSCAFG00000007155 N 0.000
Zc3h8 Mus musculus ENSMUSG00000027387 N 0.000
ZC3H8 Sus scrofa ENSSSCG00000008099 N 0.000
ZC3H8 Oryctolagus cuniculus ENSOCUG00000011253 N 0.000
ZC3H8 Microcebus murinus ENSMICG00000013555 N 0.000
ZC3H8 Gorilla gorilla ENSGGOG00000009004 N 0.000
ZC3H8 Loxodonta africana ENSLAFG00000004675 N 0.000
ZC3H8 Pan troglodytes ENSPTRG00000012362 N 0.000
Zc3h8 Rattus norvegicus ENSRNOG00000017647 N 0.000
ZC3H8 Homo sapiens ENSG00000144161 N 0.000
ZC3H8 Echinops telfairi ENSETEG00000016560 N 0.000
ZC3H8 Erinaceus europaeus ENSEEUG00000006984 N 0.000
ZC3H8 Sorex araneus ENSSARG00000012883 N 0.000