ENSCJAG00000001302 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000001302 T35465_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.858
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.858
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.858
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.837
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002283 RRM 16 84
ENSCJAP00000002283 RRM 106 175

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

218 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.761
AAA49742 Xenopus laevis AAA49742 I 0.761
AAA49949 Xenopus laevis AAA49949 I 0.732
AAA49950 Xenopus laevis AAA49950 I 0.722
AAH45260 Xenopus laevis AAH45260 I 0.775
AAH72090 Xenopus laevis AAH72090 I 0.775
AAI69881 Xenopus laevis AAI69881 I 0.722
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.838
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.761
CBF67555 Xenopus laevis CBF67555 I 0.761
CBF67578 Xenopus laevis CBF67578 I 0.722
CBF67672 Xenopus laevis CBF67672 I 0.775
CBU92428 Xenopus laevis CBU92428 I 0.761
CBU92451 Xenopus laevis CBU92451 I 0.722
CBU92546 Xenopus laevis CBU92546 I 0.775
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.711
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.718
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.782
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.803
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.789
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.838
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.793
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.782
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.719
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.800
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.807
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.796
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.761
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.809
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.715
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.712
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.796
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.752
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.830
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.745
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.736
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.741
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.824
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.843
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.722
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.727
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.746
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.743
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.807
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.747
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.715
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.793
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.814
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.816
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.800
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.701
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.700
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.786
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.801
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.761
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.789
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.856
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.746
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.782
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.755
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.712
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.761
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.724
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.789
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.817
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.803
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.701
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.782
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.754
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.838
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.761
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.810
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.789
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.746
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.782
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.838
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.803
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.727
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.817
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.838
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.796
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.824
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.739
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.725
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.761
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.838
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.838
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.715
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.775
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.701
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.732
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.838
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.775
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.768
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.831
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.738
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.831
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.803
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.797
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.771
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.838
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.814
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.824
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.727
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.708
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.789
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.755
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.724
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.739
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.738
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.796
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.804
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.807
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.810
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.824
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.838
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.817
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.838
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.831
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.796
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.810
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.824
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.831
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.838
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.831
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.831
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.729
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.831
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.754
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.764
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.729
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.824
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.838
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.796
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.768
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.768
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.718
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.803
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.803
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.721
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.768
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.838
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.725
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.768
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.838
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.796
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.803
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.718
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.838
Gm8991 Mus musculus ENSMUSG00000059179 I 0.725
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.838
HNRNPA1 Homo sapiens ENSG00000135486 D 0.838
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.775
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.725
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.838
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.768
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.838
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.817
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.838
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.732
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.739
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.727
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.725
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.727
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.727
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.727
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.727
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.725
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.727
HNRNPA3 Homo sapiens ENSG00000170144 I 0.727
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.708
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.725
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.727
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.727
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.727
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.727
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.727
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.727
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.725
LOC100054206 Equus caballus ENSECAG00000006699 I 0.829
LOC100066794 Equus caballus ENSECAG00000023237 I 0.725
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.727
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.838
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.789
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.831
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.817
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.810
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.727
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.824
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.831
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.831
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.838
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.817
LOC781499 Bos taurus ENSBTAG00000021580 I 0.727
LOC785445 Bos taurus ENSBTAG00000025621 I 0.803
P17130 Xenopus laevis P17130 I 0.761
P51968 Xenopus laevis P51968 I 0.732
P51992 Xenopus laevis P51992 I 0.722
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.732
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.838
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.838
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.817
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.838
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.838
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.838
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.727
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.814
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.838
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.793
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.774
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.803
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.796
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.782
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.768
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.761
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.807
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.755
zgc:66127 Danio rerio ENSDARG00000011020 I 0.704