cassava37001.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava37001.valid.m1 T49350_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava37001.valid.m1 RRM 77 147
cassava37001.valid.m1 RRM 170 241
cassava37001.valid.m1 RRM 277 341

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29666.m001436 Ricinus communis 29666.m001436 I 0.894
29842.m003612 Ricinus communis 29842.m003612 N 0.760
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.880
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.736
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.764
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.745
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.716
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.731
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.707
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.702
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.938
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 1.000
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 1.000
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 1.000
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 1.000
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.726
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.726
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.736
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.769
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.769
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.774
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.784
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.779
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.774
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.716
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.716
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.731
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.731
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.716
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.726
MDP0000223369 Malus x domestica MDP0000223369 N 0.822
MDP0000294628 Malus x domestica MDP0000294628 I 0.764
MDP0000614064 Malus x domestica MDP0000614064 N 0.827
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.726
mgf010468m Mimulus guttatus mgf010468m I 0.784
mgf014417m Mimulus guttatus mgf014417m N 0.769
PK10695.1 Cannabis sativa PK10695.1 I 0.774
ppa006577m Prunus persica ppa006577m I 0.827
ppa006617m Prunus persica ppa006617m N 0.736
SB06G029180 Sorghum bicolor Sb06g029180 N 0.707
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.726