gw1.1.157.1 (Selaginella moellendorfii)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 gw1.1.157.1 T62411_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.1.157.1 YTH 49 139

Links

Other YTH family RBPs
Other Selaginella moellendorfii RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29765.m000746 Ricinus communis 29765.m000746 N 0.703
29889.m003364 Ricinus communis 29889.m003364 N 0.758
29929.m004643 Ricinus communis 29929.m004643 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.747
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.769
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.769
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.769
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.758
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.736
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.769
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.703
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.758
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.747
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.714
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.714
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.714
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.769
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.769
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.769
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.747
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.747
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.769
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.747
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.703
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.780
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.747
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.780
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.736
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.769
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.780
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.714
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.747
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.769
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.791
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.758
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.758
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.758
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.780
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.736
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.758
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.758
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.769
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.769
MDP0000256033 Malus x domestica MDP0000256033 N 0.725
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.780
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.780
MDP0000488248 Malus x domestica MDP0000488248 N 0.703
MDP0000552419 Malus x domestica MDP0000552419 N 0.769
MDP0000617859 Malus x domestica MDP0000617859 N 0.780
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.758
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.780
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
mgf001716m Mimulus guttatus mgf001716m N 0.725
mgf014143m Mimulus guttatus mgf014143m N 0.747
mgf014829m Mimulus guttatus mgf014829m N 0.725
mgf015583m Mimulus guttatus mgf015583m N 0.747
mgf017987m Mimulus guttatus mgf017987m N 0.747
mgf019821m Mimulus guttatus mgf019821m N 0.703
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.703
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.714
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
PK01736.1 Cannabis sativa PK01736.1 N 0.747
PK02315.1 Cannabis sativa PK02315.1 N 0.725
PK17832.1 Cannabis sativa PK17832.1 N 0.769
PK23104.1 Cannabis sativa PK23104.1 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.736
ppa002483m Prunus persica ppa002483m N 0.769
ppa002588m Prunus persica ppa002588m N 0.769
ppa003557m Prunus persica ppa003557m N 0.714
ppa003664m Prunus persica ppa003664m N 0.747
ppa018635m Prunus persica ppa018635m N 0.736
SB03G031190 Sorghum bicolor Sb03g031190 N 0.769
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
SB07G006330 Sorghum bicolor Sb07g006330 N 0.791
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.780
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.725
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.747
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703