XM_002887730.1 (Arabidopsis lyrata)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 fgenesh2_kg.2__2224__AT1G79270.1 T62206_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__2224__AT1G79270.1 YTH 370 460

Links

Other YTH family RBPs
Other Arabidopsis lyrata RBPs

180 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.989
MDP0000171737 Malus x domestica MDP0000171737 N 0.879
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.879
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.879
ppa003664m Prunus persica ppa003664m N 0.879
MDP0000231231 Malus x domestica MDP0000231231 N 0.868
MDP0000286471 Malus x domestica MDP0000286471 N 0.868
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.868
29955.m001158 Ricinus communis 29955.m001158 N 0.868
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.868
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.868
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.857
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.857
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.846
PK23104.1 Cannabis sativa PK23104.1 N 0.846
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.846
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.835
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.835
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.835
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.824
SB03G031190 Sorghum bicolor Sb03g031190 N 0.813
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.813
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.813
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.802
MDP0000405927 Malus x domestica MDP0000405927 N 0.802
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.802
MDP0000552419 Malus x domestica MDP0000552419 N 0.802
MDP0000287088 Malus x domestica MDP0000287088 N 0.802
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.802
MDP0000248088 Malus x domestica MDP0000248088 N 0.802
MDP0000617859 Malus x domestica MDP0000617859 N 0.802
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.791
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.791
ppa002588m Prunus persica ppa002588m N 0.791
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.791
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.791
ppa002483m Prunus persica ppa002483m N 0.791
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.780
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.780
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.780
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.769
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.769
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.769
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.769
ppa018635m Prunus persica ppa018635m N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.769
PK17832.1 Cannabis sativa PK17832.1 N 0.769
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.769
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.769
29889.m003364 Ricinus communis 29889.m003364 N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
MDP0000132385 Malus x domestica MDP0000132385 N 0.769
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.769
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
MDP0000306387 Malus x domestica MDP0000306387 N 0.769
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
PK01736.1 Cannabis sativa PK01736.1 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.758
29929.m004643 Ricinus communis 29929.m004643 N 0.758
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.758
PK26094.1 Cannabis sativa PK26094.1 N 0.758
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
SB02G003990 Sorghum bicolor Sb02g003990 N 0.747
mgf014829m Mimulus guttatus mgf014829m N 0.747
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.747
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.747
PK02315.1 Cannabis sativa PK02315.1 N 0.747
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.747
mgf001716m Mimulus guttatus mgf001716m N 0.747
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.747
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.747
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.747
mgf015583m Mimulus guttatus mgf015583m N 0.736
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.736
mgf019821m Mimulus guttatus mgf019821m N 0.736
mgf017987m Mimulus guttatus mgf017987m N 0.736
mgf013853m Mimulus guttatus mgf013853m N 0.736
mgf014143m Mimulus guttatus mgf014143m N 0.736
MDP0000488248 Malus x domestica MDP0000488248 N 0.736
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.736
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.736
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.736
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
MDP0000256033 Malus x domestica MDP0000256033 N 0.736
mgf009938m Mimulus guttatus mgf009938m N 0.736
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.736
MDP0000124048 Malus x domestica MDP0000124048 N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
ppa003557m Prunus persica ppa003557m N 0.725
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.725
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.725
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.725
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.725
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.725
29765.m000746 Ricinus communis 29765.m000746 N 0.725
SB06G027960 Sorghum bicolor Sb06g027960 N 0.725
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.725
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.725
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.725
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.725
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.725
mgf019846m Mimulus guttatus mgf019846m N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
ppa002677m Prunus persica ppa002677m N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.725
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.714
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
mgf013935m Mimulus guttatus mgf013935m N 0.714
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.714
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.714
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
SB01G008170 Sorghum bicolor Sb01g008170 N 0.714
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.703
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.703
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.703
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.703
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703