D3ZNE1_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000005671 T41042_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.810
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.810
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.810
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.796
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000000770 RRM 15 83
ENSRNOP00000000770 RRM 105 175
ENSRNOP00000053818 RRM 15 83
ENSRNOP00000053818 RRM 105 175

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

217 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GF17196 Drosophila ananassae FBgn0094214 N 0.000
GG11868 Drosophila erecta FBgn0104163 N 0.000
GH21615 Drosophila grimshawi FBgn0129076 N 0.000
CG11337 Drosophila melanogaster FBgn0039846 N 0.000
GI10566 Drosophila mojavensis FBgn0133330 N 0.000
GL27239 Drosophila persimilis FBgn0164820 N 0.000
GA10930-RA Drosophila pseudoobscura FBgn0070986 N 0.000
GM12088 Drosophila sechellia FBgn0167029 N 0.000
GJ22920 Drosophila virilis FBgn0210023 N 0.000
GK22421 Drosophila willistoni FBgn0224400 N 0.000
GE23317 Drosophila yakuba FBgn0240512 N 0.000