ppa019392m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa019392m T58485_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa019392m RRM 18 86

Links

Other RRM family RBPs
Other Prunus persica RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29908.m006046 Ricinus communis 29908.m006046 I 0.884
29923.m000811 Ricinus communis 29923.m000811 I 0.000
30076.m004440 Ricinus communis 30076.m004440 I 0.783
30170.m013735 Ricinus communis 30170.m013735 I 0.000
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.000
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.884
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.754
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.884
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.768
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.000
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.000
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.000
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.000
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.000
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.000
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.768
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.768
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.000
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.754
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.768
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.884
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.899
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.000
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.000
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.754
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.710
CU179634_3 Medicago truncatula CU179634_3 I 0.768
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.812
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.797
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.000
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.870
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.754
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.000
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.754
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.870
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.000
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.783
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.870
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.797
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.855
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.725
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.797
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.841
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.768
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.797
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.870
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.783
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.797
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.000
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.000
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.000
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.000
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.000
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.884
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.000
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.754
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.754
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.797
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.754
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.783
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.000
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.000
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.000
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.725
MDP0000118777 Malus x domestica MDP0000118777 I 0.754
MDP0000134468 Malus x domestica MDP0000134468 I 0.928
MDP0000138486 Malus x domestica MDP0000138486 I 0.768
MDP0000181802 Malus x domestica MDP0000181802 N 0.000
MDP0000184420 Malus x domestica MDP0000184420 I 0.739
MDP0000233609 Malus x domestica MDP0000233609 I 0.884
MDP0000271231 Malus x domestica MDP0000271231 N 0.000
MDP0000284454 Malus x domestica MDP0000284454 I 0.768
MDP0000488395 Malus x domestica MDP0000488395 I 0.768
MDP0000548950 Malus x domestica MDP0000548950 I 0.768
MDP0000744398 Malus x domestica MDP0000744398 I 0.768
MDP0000857317 Malus x domestica MDP0000857317 I 0.754
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.725
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.783
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.899
mgf016660m Mimulus guttatus mgf016660m I 0.000
mgf017214m Mimulus guttatus mgf017214m I 0.797
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.000
PK14266.1 Cannabis sativa PK14266.1 I 0.754
PK15672.1 Cannabis sativa PK15672.1 I 0.928
PK21213.1 Cannabis sativa PK21213.1 I 0.783
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.768
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.913
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.768
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.754
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.783
ppa009716m Prunus persica ppa009716m I 0.783
ppa009964m Prunus persica ppa009964m I 0.783
ppa016222m Prunus persica ppa016222m I 0.783
ppa018603m Prunus persica ppa018603m I 0.739
ppa018926m Prunus persica ppa018926m I 1.000
SB03G041530 Sorghum bicolor Sb03g041530 I 0.000
SB03G046430 Sorghum bicolor Sb03g046430 N 0.000
SB04G030020 Sorghum bicolor Sb04g030020 I 0.000
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.000