ROD1 (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000119314 T37231_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.801
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.801
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.801
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000334499 RRM 32 85
ENSP00000334499 RRM 155 221
ENSP00000334499 RRM 331 398
ENSP00000334499 RRM 449 482
ENSP00000340705 RRM 89 155
ENSP00000340705 RRM 265 331
ENSP00000340705 RRM 382 446
ENSP00000363373 RRM 61 114
ENSP00000363373 RRM 184 250
ENSP00000363373 RRM 360 426
ENSP00000363373 RRM 477 541
ENSP00000363375 RRM 33 86
ENSP00000363375 RRM 156 222
ENSP00000363375 RRM 332 398
ENSP00000363375 RRM 449 513
ENSP00000414921 RRM 67 120
ENSP00000414921 RRM 190 256
ENSP00000414921 RRM 366 432
ENSP00000414921 RRM 483 547
ENSP00000415233 RRM 29 82
ENSP00000415233 RRM 152 218
ENSP00000415233 RRM 328 395
ENSP00000415233 RRM 446 510

Links

Other RRM family RBPs
Other Homo sapiens RBPs

93 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Homo sapiens ENSG00000011304 D 0.794
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.729
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.719
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.733
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.794
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.996
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.733
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.794
ROD1 Pan troglodytes ENSPTRG00000021263 I 1.000
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.739
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.759
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.996
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.945
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.793
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.801
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.733
Rod1 Mus musculus ENSMUSG00000028382 I 0.972
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.733
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.786
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.733
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.794
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.801
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.733
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.733
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.778
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.733
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.733
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.885
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.747
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.733
AAF00041 Xenopus laevis AAF00041 I 0.798
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.760
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.720
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.708
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.968
ROD1 Sus scrofa ENSSSCG00000005466 I 0.972
AAH97557 Xenopus laevis AAH97557 I 0.747
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.790
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.786
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.721
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.700
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.712
AAH45068 Xenopus laevis AAH45068 I 0.787
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.733
ROD1 Equus caballus ENSECAG00000021243 I 0.972
ROD1 Danio rerio ENSDARG00000043757 I 0.832
PTBP1 Equus caballus ENSECAG00000018845 I 0.778
LOC100057336 Equus caballus ENSECAG00000015783 I 0.730
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.728
ptbp1b Danio rerio ENSDARG00000031907 I 0.763
ptbp1a Danio rerio ENSDARG00000019362 I 0.771
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.785
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.988
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.733
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.786
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.995
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.733
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.798
ROD1 Canis familiaris ENSCAFG00000003015 I 0.937
ROD1 Bos taurus ENSBTAG00000016750 I 0.969
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.925
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.738
PTBP2 Homo sapiens ENSG00000117569 I 0.733
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.750
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.794
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.793
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.732
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.736
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.976
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.746
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.729
ROD1 Macaca mulatta ENSMMUG00000000464 I 1.000
ROD1 Gorilla gorilla ENSGGOG00000001755 I 1.000
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.747
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.733
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.767
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.794
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.729
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.733
ROD1 Vicugna pacos ENSVPAG00000006136 N 0.868
ROD1 Choloepus hoffmanni ENSCHOG00000002039 N 0.914
ROD1 Myotis lucifugus ENSMLUG00000006812 N 0.809
ROD1 Tursiops truncatus ENSTTRG00000009283 N 0.895
ROD1 Tarsius syrichta ENSTSYG00000010375 N 0.969
ROD1 Pteropus vampyrus ENSPVAG00000002177 N 0.844
ROD1 Procavia capensis ENSPCAG00000002288 N 0.955
ROD1 Sorex araneus ENSSARG00000002649 N 0.926
ROD1 Taeniopygia guttata ENSTGUG00000001262 N 0.749
ROD1 Dasypus novemcinctus ENSDNOG00000012274 N 0.704
PTBP2 Erinaceus europaeus ENSEEUG00000009973 N 0.741
ROD1 Erinaceus europaeus ENSEEUG00000014435 N 0.739
PTBP2 Sus scrofa ENSSSCG00000006879 N 0.741