PDK_20s1441394g001 (Phoenix dactylifera)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 PDK_20s1441394g001 T62555_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1441394g001 YTH 531 615

Links

Other YTH family RBPs
Other Phoenix dactylifera RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29890.m000285 Ricinus communis 29890.m000285 N 0.725
29929.m004643 Ricinus communis 29929.m004643 N 0.780
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.769
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.802
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.813
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.703
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.729
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.813
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.857
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.791
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.824
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.791
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.813
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.813
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.813
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.725
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.725
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.780
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.758
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.703
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.813
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.714
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.714
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.791
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.703
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.703
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.791
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.703
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.714
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.857
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.714
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.703
GRMZM2G363789 Zea mays GRMZM2G363789 N 0.765
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.802
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.769
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.802
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.747
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.725
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.765
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.703
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.741
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.725
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.813
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.857
MDP0000124048 Malus x domestica MDP0000124048 N 0.703
MDP0000132385 Malus x domestica MDP0000132385 N 0.703
MDP0000171737 Malus x domestica MDP0000171737 N 0.714
MDP0000189157 Malus x domestica MDP0000189157 N 0.725
MDP0000199885 Malus x domestica MDP0000199885 N 0.741
MDP0000231231 Malus x domestica MDP0000231231 N 0.703
MDP0000248088 Malus x domestica MDP0000248088 N 0.813
MDP0000286471 Malus x domestica MDP0000286471 N 0.703
MDP0000287088 Malus x domestica MDP0000287088 N 0.813
MDP0000299155 Malus x domestica MDP0000299155 N 0.741
MDP0000306387 Malus x domestica MDP0000306387 N 0.703
MDP0000405927 Malus x domestica MDP0000405927 N 0.813
MDP0000552419 Malus x domestica MDP0000552419 N 0.813
MDP0000617859 Malus x domestica MDP0000617859 N 0.813
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.780
mgf009938m Mimulus guttatus mgf009938m N 0.703
mgf013853m Mimulus guttatus mgf013853m N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.736
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.736
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.714
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.718
PK01736.1 Cannabis sativa PK01736.1 N 0.736
PK05579.1 Cannabis sativa PK05579.1 N 0.714
PK17832.1 Cannabis sativa PK17832.1 N 0.791
PK23104.1 Cannabis sativa PK23104.1 N 0.725
ppa002483m Prunus persica ppa002483m N 0.791
ppa002588m Prunus persica ppa002588m N 0.791
ppa002677m Prunus persica ppa002677m N 0.714
ppa003664m Prunus persica ppa003664m N 0.725
SB01G008170 Sorghum bicolor Sb01g008170 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
SB07G006330 Sorghum bicolor Sb07g006330 N 0.813
SB07G024500 Sorghum bicolor Sb07g024500 N 0.857
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.714
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.813
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.703
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.725