CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDK_20s1441394g001
(
Phoenix dactylifera
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
PDK_20s1441394g001
T62555_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1441394g001
YTH
531
615
LFFSVNASAQFCGVAEMIGPVDFEKSVDYWQQDKWSGQFPVKWHIVKDVPNNLFRHIILENNDNKPVTNSRDTQEVKLEQVVGNE
Links
Other
YTH
family RBPs
Other
Phoenix dactylifera
RBPs
108 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH74252
Xenopus laevis
AAH74252
I
0.000
Ame_R017219
Ailuropoda melanoleuca
Ame_R017219
I
0.000
ENSG00000248163
Homo sapiens
ENSG00000248163
I
0.000
ENSG00000249644
Homo sapiens
ENSG00000249644
I
0.000
ENSPPYG00000005714
Pongo pygmaeus
ENSPPYG00000005714
I
0.000
estExt_GenewiseH_1.C_6000020
Branchiostoma floridae
estExt_GenewiseH_1.C_6000020
I
0.000
LOC100389932
Callithrix jacchus
ENSCJAG00000006217
I
0.000
LOC100402824
Callithrix jacchus
ENSCJAG00000012121
I
0.000
LOC722459
Macaca mulatta
ENSMMUG00000004271
I
0.000
NOVA1
Monodelphis domestica
ENSMODG00000001830
I
0.000
Nova1
Mus musculus
ENSMUSG00000021047
I
0.000
NOVA1
Oryctolagus cuniculus
ENSOCUG00000017622
I
0.000
NOVA1
Oryzias latipes
ENSORLG00000000350
I
0.000
NOVA1
Sorex araneus
ENSSARG00000002599
I
0.000
nova1
Xenopus tropicalis
ENSXETG00000010244
I
0.000
NOVA1
Vicugna pacos
ENSVPAG00000007807
I
0.000
NOVA1
Pan troglodytes
ENSPTRG00000006229
I
0.000
NOVA1
Pteropus vampyrus
ENSPVAG00000002564
I
0.000
Nova1
Rattus norvegicus
ENSRNOG00000031440
I
0.000
NOVA1
Takifugu rubripes
ENSTRUG00000016275
I
0.000
NOVA1
Tupaia belangeri
ENSTBEG00000009774
I
0.000
NOVA1
Taeniopygia guttata
ENSTGUG00000011799
I
0.000
NOVA1
Tetraodon nigroviridis
ENSTNIG00000011634
I
0.000
NOVA1
Takifugu rubripes
ENSTRUG00000006617
I
0.000
NOVA1
Gasterosteus aculeatus
ENSGACG00000020175
I
0.000
NOVA1
Felis catus
ENSFCAG00000004226
I
0.000
NOVA1
Erinaceus europaeus
ENSEEUG00000013658
I
0.000
nova1
Danio rerio
ENSDARG00000020178
I
0.000
NOVA1
Cavia porcellus
ENSCPOG00000002579
I
0.000
NOVA1
Anolis carolinensis
ENSACAG00000000477
I
0.000
NOVA1
Choloepus hoffmanni
ENSCHOG00000006617
I
0.000
NOVA1
Canis familiaris
ENSCAFG00000012492
I
0.000
NOVA1
Homo sapiens
ENSG00000139910
D
0.000
NOVA1
Gasterosteus aculeatus
ENSGACG00000012628
I
0.000
NOVA1
Gorilla gorilla
ENSGGOG00000016495
I
0.000
NOVA1
Loxodonta africana
ENSLAFG00000006455
I
0.000
NOVA1
Meleagris gallopavo
ENSMGAG00000012359
I
0.000
Nova1
Dipodomys ordii
ENSDORG00000012633
I
0.000
nova2
Xenopus tropicalis
ENSXETG00000019101
I
0.000
NOVA2
Canis familiaris
ENSCAFG00000004359
I
0.000
nova2
Danio rerio
ENSDARG00000017673
I
0.000
NOVA2
Bos taurus
ENSBTAG00000013157
I
0.000
NOVA2
Sus scrofa
ENSSSCG00000003095
I
0.000
NOVA2
Loxodonta africana
ENSLAFG00000025917
I
0.000
Nova2
Mus musculus
ENSMUSG00000030411
D
0.000
NOVA2
Oryctolagus cuniculus
ENSOCUG00000022891
I
0.000
NOVA2
Homo sapiens
ENSG00000104967
D
0.000
NOVA2
Pan troglodytes
ENSPTRG00000011173
I
0.000
NOVA2
Felis catus
ENSFCAG00000009509
I
0.000
NOVA2
Pteropus vampyrus
ENSPVAG00000006169
I
0.000
Nova2
Rattus norvegicus
ENSRNOG00000013847
I
0.000
NOVA2
Myotis lucifugus
ENSMLUG00000008039
I
0.000
NOVA2
Anolis carolinensis
ENSACAG00000003724
I
0.000