CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDK_20s1441394g001
(
Phoenix dactylifera
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
PDK_20s1441394g001
T62555_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1441394g001
YTH
531
615
LFFSVNASAQFCGVAEMIGPVDFEKSVDYWQQDKWSGQFPVKWHIVKDVPNNLFRHIILENNDNKPVTNSRDTQEVKLEQVVGNE
Links
Other
YTH
family RBPs
Other
Phoenix dactylifera
RBPs
108 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.C_scaffold_1459000002
Capitella teleta
fgenesh1_pg.C_scaffold_1459000002
N
0.000
Pa_3_11180
Podospora anserina
Pa_3_11180
N
0.000
PK00617.1
Cannabis sativa
PK00617.1
N
0.000
PK01187.1
Cannabis sativa
PK01187.1
N
0.000
PK07703.1
Cannabis sativa
PK07703.1
N
0.000
s_451933
Phytophthora sojae
s_451933
N
0.000