ENSCJAG00000005407 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000005407 T35522_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.823
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.823
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.823
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000009874 RRM 11 81
ENSCJAP00000009874 RRM 103 172

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.789
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.000
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.776
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.000
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.789
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.706
LOC781499 Bos taurus ENSBTAG00000021580 I 0.000
LOC785445 Bos taurus ENSBTAG00000025621 I 0.741
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.735
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.736
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.703
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.000
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.769
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.748
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.721
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.759
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.741
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.782
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.776
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.712
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.748
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.000
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.755
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.748
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.789
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.714
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.748
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.000
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.735
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.762
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.762
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.774
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.000
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.728
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.701
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.789
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.789
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.721
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.718
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.000
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.769
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.000
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.705
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.728
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.707
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.762
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.727
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.722
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.753
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.760
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.792
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.721
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.768
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.728
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.000
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.789
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.728
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.743
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.755
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.721
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.714
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.724
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.733
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.721
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.733
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.736
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.726
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.000
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.740
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.717
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.755
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.710
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.753
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.000
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.000
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.778
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.746
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.747
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.711
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.726
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.761
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.000
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.000
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.000
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.789
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.727
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.776
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.774
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.746
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.000
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.000
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.000
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.762
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.000
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.000
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.000
zgc:66127 Danio rerio ENSDARG00000011020 I 0.000
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.000
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.789
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.731
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.714
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.711
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.714
LOC100054206 Equus caballus ENSECAG00000006699 I 0.774
LOC100066794 Equus caballus ENSECAG00000023237 I 0.000
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.789
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.000
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.776
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.762
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.000
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.000
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.789
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.000
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.701
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.000
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.721
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.711
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.701
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.000
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.782
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.000
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.725
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.706
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.000
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.789
HNRNPA1 Homo sapiens ENSG00000135486 D 0.789
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.769
HNRNPA3 Homo sapiens ENSG00000170144 I 0.000
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.746
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.789
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.769
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.755
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.782
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.000
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.775
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.746
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.789
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.733
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.729
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.790
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.782
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.776
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.747
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.755
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.776
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.789
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.714
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.754
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.725
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.752
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.000
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.000
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.000
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.750
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.000
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.726
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.753
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.000
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.743
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.769
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.789
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.000
Gm8991 Mus musculus ENSMUSG00000059179 I 0.000
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.000
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.753
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.776
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.789
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.782
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.782
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.789
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.782
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.776
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.762
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.728
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.796
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.776
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.755
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.000
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.776
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.789
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.000
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.000
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.761
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.776
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.727
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.789
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.000
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.000
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.769
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.000
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.739
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.000
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.710
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.789
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.000
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.736
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.755
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.789
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.000
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.755
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.000
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.000
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.755
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.755
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.000
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.714
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.721
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.741
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.000
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.747
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.000
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.000
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.731
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.707
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.000
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.000
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.789
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.000
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.000
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.000
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.000
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.762
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.789
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.728
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.000
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.789
P51968 Xenopus laevis P51968 I 0.000
CBF67578 Xenopus laevis CBF67578 I 0.000
CBF67672 Xenopus laevis CBF67672 I 0.728
CBU92428 Xenopus laevis CBU92428 I 0.714
CBU92451 Xenopus laevis CBU92451 I 0.000
CBU92546 Xenopus laevis CBU92546 I 0.728
P17130 Xenopus laevis P17130 I 0.714
CBF67555 Xenopus laevis CBF67555 I 0.714
AAI69881 Xenopus laevis AAI69881 I 0.000
AAH72090 Xenopus laevis AAH72090 I 0.728
AAH45260 Xenopus laevis AAH45260 I 0.728
AAA49950 Xenopus laevis AAA49950 I 0.000
AAA49949 Xenopus laevis AAA49949 I 0.000
AAA49742 Xenopus laevis AAA49742 I 0.714
AAA49741 Xenopus laevis AAA49741 I 0.714
P51992 Xenopus laevis P51992 I 0.000
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.735
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.000