LOC_Os11g41890 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os11g41890 T45159_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os11g41890.1 RRM 8 76
LOC_Os11g41890.1 RRM 108 178

Links

Other RRM family RBPs
Other Oryza sativa RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.821
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.814
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.807
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.814
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.807
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.793
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.814
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.821
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.850
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.971
PK13457.1 Cannabis sativa PK13457.1 N 0.871
PK25912.1 Cannabis sativa PK25912.1 N 0.864
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.829
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.821
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.857
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.829
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.871
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.836
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.829
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.879
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.836
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.814
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.836
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.730
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.829
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.850
MDP0000204698 Malus x domestica MDP0000204698 N 0.871
MDP0000907782 Malus x domestica MDP0000907782 N 0.864
MDP0000642684 Malus x domestica MDP0000642684 N 0.864
MDP0000320618 Malus x domestica MDP0000320618 N 0.871
MDP0000609551 Malus x domestica MDP0000609551 N 0.871
MDP0000188788 Malus x domestica MDP0000188788 N 0.871
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.829
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.879
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.879
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.864
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.871
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.871
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.850
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.764
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.850
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.836
mgf004139m Mimulus guttatus mgf004139m N 0.793
mgf012147m Mimulus guttatus mgf012147m N 0.843
mgf009486m Mimulus guttatus mgf009486m N 0.800
mgf009385m Mimulus guttatus mgf009385m N 0.843
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.843
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.843
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.736
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.850
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.864
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.871
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.843
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.837
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.857
ppa004834m Prunus persica ppa004834m N 0.879
ppa005119m Prunus persica ppa005119m N 0.879
ppa005122m Prunus persica ppa005122m N 0.879
ppa005132m Prunus persica ppa005132m N 0.879
30048.m000319 Ricinus communis 30048.m000319 N 0.886
27613.m000635 Ricinus communis 27613.m000635 N 0.879
29608.m000212 Ricinus communis 29608.m000212 N 0.886
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.707
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.750
SB05G025410 Sorghum bicolor Sb05g025410 N 0.800
SB02G005620 Sorghum bicolor Sb02g005620 N 0.864
SB02G005670 Sorghum bicolor Sb02g005670 N 0.864
SB02G037690 Sorghum bicolor Sb02g037690 N 0.843
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.700
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.864
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.871
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.857
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.843
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.829
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.857
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.864