CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000188788
(
Malus x domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MDP0000188788
T57409_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000188788
RRM
37
105
LFIGGISWDTDEERLKEYFRKYGEVVEAVIMRDRATGRARGFGFVVFADPAVAERVVMDKHMIDCRTVE
MDP0000188788
RRM
136
205
IFVGGLASTVTESDFKKYFDQFGTVTDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLXKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Malus x domestica
RBPs
80 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29805.m001527
Ricinus communis
29805.m001527
N
0.000
AC235022_4
Medicago truncatula
AC235022_4
N
0.000
RS2Z33
Arabidopsis thaliana
AT2G37340-TAIR-G
N
0.000
At-RS2Z
Arabidopsis thaliana
AT3G53500-TAIR-G
N
0.000
BGIOSIBCE017351
Oryza indica
BGIOSIBCE017351
N
0.000
BRADI2G00370
Brachypodium distachyon
BRADI2G00370
N
0.000
BRADI2G34687
Brachypodium distachyon
BRADI2G34687
N
0.000
BRADI2G37640
Brachypodium distachyon
BRADI2G37640
N
0.000
cassava28871.valid.m1
Manihot esculenta
cassava28871.valid.m1
N
0.000
cassava28872.valid.m1
Manihot esculenta
cassava28872.valid.m1
N
0.000
cassava441.valid.m1
Manihot esculenta
cassava441.valid.m1
N
0.000
chr1.CM0033.20.nd
Lotus japonicus
chr1.CM0033.20.nd
N
0.000
XM_002877876.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001437
N
0.000
Glyma03g33260.1
Glycine max
Glyma03g33260.1
N
0.000
Glyma03g33270.1
Glycine max
Glyma03g33270.1
N
0.000
Glyma19g35980.1
Glycine max
Glyma19g35980.1
N
0.000
Glyma19g35990.1
Glycine max
Glyma19g35990.1
N
0.000
GRMZM2G099186
Zea mays
GRMZM2G099186
N
0.000
GRMZM2G099317
Zea mays
GRMZM2G099317
N
0.000
GRMZM2G175419
Zea mays
GRMZM2G175419
N
0.000
GRMZM2G474658
Zea mays
GRMZM2G474658
N
0.000
GSVIVG00032633001
Vitis vinifera
GSVIVG00032633001
N
0.000
LjT38D03.70.nd
Lotus japonicus
LjT38D03.70.nd
N
0.000
LjT38D03.80.nd
Lotus japonicus
LjT38D03.80.nd
N
0.000
LOC_Os01g06290
Oryza sativa
LOC_Os01g06290
N
0.000
LOC_Os03g17710
Oryza sativa
LOC_Os03g17710
N
0.000
LOC_Os05g02880
Oryza sativa
LOC_Os05g02880
N
0.000
mgf009930m
Mimulus guttatus
mgf009930m
N
0.000
PK26144.1
Cannabis sativa
PK26144.1
N
0.000
A9PGS4_POPTR
Populus trichocarpa
POPTR_0006s23170
N
0.000
B9IIW9_POPTR
Populus trichocarpa
POPTR_0016s08250
N
0.000
ppa009074m
Prunus persica
ppa009074m
N
0.000
ppa009294m
Prunus persica
ppa009294m
N
0.000
SB03G005500
Sorghum bicolor
Sb03g005500
N
0.000
SB09G001910
Sorghum bicolor
Sb09g001910
N
0.000
Sb09g001920
Sorghum bicolor
Sb09g001920
N
0.000