MDP0000188788 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000188788 T57409_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000188788 RRM 37 105
MDP0000188788 RRM 136 205

Links

Other RRM family RBPs
Other Malus x domestica RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000635 Ricinus communis 27613.m000635 N 0.914
29608.m000212 Ricinus communis 29608.m000212 N 0.863
30048.m000319 Ricinus communis 30048.m000319 N 0.892
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.705
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.791
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.835
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.842
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.791
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.827
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.799
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.806
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.864
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.871
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.871
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.871
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.863
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.921
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.878
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.892
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.900
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.878
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.842
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.730
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.892
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.827
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.856
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.727
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.835
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.842
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.820
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.906
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.878
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.899
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.871
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.899
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.906
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.799
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.784
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.784
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.791
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.791
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.705
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.705
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.705
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.712
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.871
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.942
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.770
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.799
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.871
MDP0000204698 Malus x domestica MDP0000204698 N 0.993
MDP0000320618 Malus x domestica MDP0000320618 N 0.871
MDP0000609551 Malus x domestica MDP0000609551 N 1.000
MDP0000642684 Malus x domestica MDP0000642684 N 0.856
MDP0000907782 Malus x domestica MDP0000907782 N 0.863
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.863
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.906
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.777
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.871
mgf004139m Mimulus guttatus mgf004139m N 0.813
mgf009385m Mimulus guttatus mgf009385m N 0.863
mgf009486m Mimulus guttatus mgf009486m N 0.807
mgf012147m Mimulus guttatus mgf012147m N 0.863
PK13457.1 Cannabis sativa PK13457.1 N 0.849
PK25912.1 Cannabis sativa PK25912.1 N 0.935
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.899
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.849
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.899
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.892
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.851
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.885
ppa004834m Prunus persica ppa004834m N 0.986
ppa005119m Prunus persica ppa005119m N 0.878
ppa005122m Prunus persica ppa005122m N 0.986
ppa005132m Prunus persica ppa005132m N 0.878
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.712
SB02G005620 Sorghum bicolor Sb02g005620 N 0.806
SB02G005670 Sorghum bicolor Sb02g005670 N 0.806
SB02G037690 Sorghum bicolor Sb02g037690 N 0.799
SB05G025410 Sorghum bicolor Sb05g025410 N 0.741