PTBP1 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000025512 T35916_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.973
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.973
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.973
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000017543 RRM 61 116
ENSCPOP00000017543 RRM 186 252
ENSCPOP00000017543 RRM 365 431
ENSCPOP00000017543 RRM 482 546

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Homo sapiens ENSG00000011304 D 0.973
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.969
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.782
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.973
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.785
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.782
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.973
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.785
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.957
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.965
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.851
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.736
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.782
Rod1 Mus musculus ENSMUSG00000028382 I 0.793
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.782
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.918
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.782
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.789
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.804
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.754
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.793
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.782
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.793
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.787
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.957
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.782
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.782
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.801
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.829
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.782
AAF00041 Xenopus laevis AAF00041 I 0.891
AAH45068 Xenopus laevis AAH45068 I 0.879
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.782
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.798
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.781
Smptb Rattus norvegicus ENSRNOG00000028033 I 0.720
ROD1 Sus scrofa ENSSSCG00000005466 I 0.796
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.969
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.922
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.774
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.733
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.745
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.736
AAH97557 Xenopus laevis AAH97557 I 0.820
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.934
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.786
ptbp1b Danio rerio ENSDARG00000031907 I 0.809
ROD1 Danio rerio ENSDARG00000043757 I 0.800
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.902
LOC100057336 Equus caballus ENSECAG00000015783 I 0.779
PTBP1 Equus caballus ENSECAG00000018845 I 0.945
ROD1 Equus caballus ENSECAG00000021243 I 0.796
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.875
PTBP2 Homo sapiens ENSG00000117569 I 0.782
ptbp1a Danio rerio ENSDARG00000019362 I 0.829
PTBP2 Danio rerio ENSDARG00000015901 I 0.755
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.789
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.785
ROD1 Bos taurus ENSBTAG00000016750 I 0.784
ROD1 Canis familiaris ENSCAFG00000003015 I 0.754
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.965
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.782
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.773
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.965
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.782
ROD1 Homo sapiens ENSG00000119314 I 0.785
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.702
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.813
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.786
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.704
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.785
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.902
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.785
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.782
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.922
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.778
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.938
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.934
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.898
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.727
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.738
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.938
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.786
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.782
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.785
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.781
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.786
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.789