ENSPCAG00000001867 (Procavia capensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPCAG00000001867 T40290_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.871
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.871
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.871
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.850
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000001760 RRM 16 85
ENSPCAP00000001760 RRM 112 168

Links

Other RRM family RBPs
Other Procavia capensis RBPs

224 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_03225 Allomyces macrogynus AMAG_03225 N 0.000
e_gw1.35.197.1 Physcomitrella patens e_gw1.35.197.1 N 0.000
e_gw1.1.997.1 Trichoderma reesei e_gw1.1.997.1 N 0.000
e_gw1.17.425.1 Trichoderma virens e_gw1.17.425.1 N 0.000
e_gw1.10.335.1 Mucor circinelloides e_gw1.10.335.1 N 0.000
augustus-scaffold_1.g441 Schizophyllum commune augustus-scaffold_1.g441 N 0.000
NFIA_109800 Neosartorya fischeri CADNFIAG00009499 N 0.000
ATEG_05588 Aspergillus terreus CADATEAG00005000 N 0.000
AO090023000955 Aspergillus oryzae CADAORAG00008034 N 0.000
e_gw1.87.91.1 Postia placenta e_gw1.87.91.1 N 0.000
estExt_fgenesh1_pg.C_90140 Trichoderma atroviride estExt_fgenesh1_pg.C_90140 N 0.000
PMAA_027560 Penicillium marneffei PMAA_027560 N 0.000
Pc22g17020 Penicillium chrysogenum Pc22g17020 N 0.000
GSTUMT00006382001 Tuber melanosporum GSTUMT00006382001 N 0.000
fgenesh1_pm.00609_#_590 Aspergillus carbonarius fgenesh1_pm.00609_#_590 N 0.000
estExt_Genewise1Plus.C_30445 Agaricus bisporus estExt_Genewise1Plus.C_30445 N 0.000
estExt_fgenesh2_kg.C_71062 Serpula lacrymans estExt_fgenesh2_kg.C_71062 N 0.000
fgenesh1_pg.C_scaffold_4000265 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000265 N 0.000
estExt_Genewise1Plus.C_200094 Postia placenta estExt_Genewise1Plus.C_200094 N 0.000
ANIA_04346 Aspergillus nidulans CADANIAG00006114 N 0.000
An04g00680 Aspergillus niger CADANGAG00003776 N 0.000
PABG_04180 Paracoccidioides brasiliensis PABG_04180 N 0.000
MGYG_01823 Microsporum gypseum MGYG_01823 N 0.000
MCYG_01275 Microsporum canis MCYG_01275 N 0.000
DEHA0A05764g Debaryomyces hansenii DEHA0A05764g N 0.000
CPSG_03082 Coccidioides posadasii CPSG_03082 N 0.000
CIMG_04180 Coccidioides immitis CIMG_04180 N 0.000
CC1G_06273 Coprinopsis cinerea CC1G_06273 N 0.000
BDBG_06195 Blastomyces dermatitidis BDBG_06195 N 0.000
SPPG_07834 Spizellomyces punctatus SPPG_07834 N 0.000
SS1G_03893 Sclerotinia sclerotiorum SS1G_03893 N 0.000
AFUA_4G06350 Aspergillus fumigatus CADAFUAG00008260 N 0.000
AFLA_113610 Aspergillus flavus CADAFLAG00005095 N 0.000
ACLA_045660 Aspergillus clavatus CADACLAG00004652 N 0.000
UREG_05625 Uncinocarpus reesii UREG_05625 N 0.000
TRV_00034 Trichophyton verrucosum TRV_00034 N 0.000
TESG_01475 Trichophyton tonsurans TESG_01475 N 0.000
TERG_07689 Trichophyton rubrum TERG_07689 N 0.000
TEQG_06916 Trichophyton equinum TEQG_06916 N 0.000
YALI0F14245g Yarrowia lipolytica YALI0F14245g N 0.000