PABPC1L (Taeniopygia guttata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTGUG00000005114 T41898_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.809
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.809
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.809
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.784
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000005282 RRM 13 83
ENSTGUP00000005282 RRM 101 169
ENSTGUP00000005282 RRM 193 250
ENSTGUP00000005282 RRM 308 376

Links

Other RRM family RBPs
Other Taeniopygia guttata RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHDRBS2 Homo sapiens ENSG00000112232 D 0.000
gw.576.16.1 Branchiostoma floridae gw.576.16.1 I 0.000
KHDRBS2 Monodelphis domestica ENSMODG00000018714 I 0.000
Khdrbs2 Mus musculus ENSMUSG00000026058 I 0.000
KHDRBS2 Oryctolagus cuniculus ENSOCUG00000012344 I 0.000
KHDRBS2 Pan troglodytes ENSPTRG00000018311 I 0.000
Khdrbs2 Rattus norvegicus ENSRNOG00000012284 I 0.000
KHDRBS2 Sus scrofa ENSSSCG00000001490 I 0.000
KHDRBS2 Taeniopygia guttata ENSTGUG00000012786 I 0.000
KHDRBS2 Tarsius syrichta ENSTSYG00000007203 I 0.000
KHDRBS2 Tursiops truncatus ENSTTRG00000005591 I 0.000
KHDRBS2 Vicugna pacos ENSVPAG00000001469 I 0.000
khdrbs3 Xenopus tropicalis ENSXETG00000009227 I 0.000
KHDRBS2 Macaca mulatta ENSMMUG00000003329 I 0.000
KHDRBS2 Meleagris gallopavo ENSMGAG00000013877 I 0.000
KHDRBS2 Loxodonta africana ENSLAFG00000006655 I 0.000
KHDRBS2 Anolis carolinensis ENSACAG00000006691 I 0.000
KHDRBS2 Bos taurus ENSBTAG00000043990 I 0.000
KHDRBS2 Canis familiaris ENSCAFG00000002470 I 0.000
LOC100395662 Callithrix jacchus ENSCJAG00000001766 I 0.000
KHDRBS2 Cavia porcellus ENSCPOG00000025621 I 0.000
KHDRBS2 Dasypus novemcinctus ENSDNOG00000014028 I 0.000
Khdrbs2 Dipodomys ordii ENSDORG00000005701 I 0.000
LOC100056966 Equus caballus ENSECAG00000021541 I 0.000
KHDRBS2 Erinaceus europaeus ENSEEUG00000003986 I 0.000
KHDRBS2 Gallus gallus ENSGALG00000016276 I 0.000
KHDRBS2 Gorilla gorilla ENSGGOG00000025068 I 0.000
AGAP003356 Anopheles gambiae AGAP003356 N 0.000