CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC1L
(
Taeniopygia guttata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTGUG00000005114
T41898_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.809
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.809
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.809
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.784
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.759
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000005282
RRM
13
83
LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIR
ENSTGUP00000005282
RRM
101
169
VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVF
ENSTGUP00000005282
RRM
193
250
VYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKARGT
ENSTGUP00000005282
RRM
308
376
LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY
Links
Other
RRM
family RBPs
Other
Taeniopygia guttata
RBPs
141 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KHDRBS2
Homo sapiens
ENSG00000112232
D
0.000
gw.576.16.1
Branchiostoma floridae
gw.576.16.1
I
0.000
KHDRBS2
Monodelphis domestica
ENSMODG00000018714
I
0.000
Khdrbs2
Mus musculus
ENSMUSG00000026058
I
0.000
KHDRBS2
Oryctolagus cuniculus
ENSOCUG00000012344
I
0.000
KHDRBS2
Pan troglodytes
ENSPTRG00000018311
I
0.000
Khdrbs2
Rattus norvegicus
ENSRNOG00000012284
I
0.000
KHDRBS2
Sus scrofa
ENSSSCG00000001490
I
0.000
KHDRBS2
Taeniopygia guttata
ENSTGUG00000012786
I
0.000
KHDRBS2
Tarsius syrichta
ENSTSYG00000007203
I
0.000
KHDRBS2
Tursiops truncatus
ENSTTRG00000005591
I
0.000
KHDRBS2
Vicugna pacos
ENSVPAG00000001469
I
0.000
khdrbs3
Xenopus tropicalis
ENSXETG00000009227
I
0.000
KHDRBS2
Macaca mulatta
ENSMMUG00000003329
I
0.000
KHDRBS2
Meleagris gallopavo
ENSMGAG00000013877
I
0.000
KHDRBS2
Loxodonta africana
ENSLAFG00000006655
I
0.000
KHDRBS2
Anolis carolinensis
ENSACAG00000006691
I
0.000
KHDRBS2
Bos taurus
ENSBTAG00000043990
I
0.000
KHDRBS2
Canis familiaris
ENSCAFG00000002470
I
0.000
LOC100395662
Callithrix jacchus
ENSCJAG00000001766
I
0.000
KHDRBS2
Cavia porcellus
ENSCPOG00000025621
I
0.000
KHDRBS2
Dasypus novemcinctus
ENSDNOG00000014028
I
0.000
Khdrbs2
Dipodomys ordii
ENSDORG00000005701
I
0.000
LOC100056966
Equus caballus
ENSECAG00000021541
I
0.000
KHDRBS2
Erinaceus europaeus
ENSEEUG00000003986
I
0.000
KHDRBS2
Gallus gallus
ENSGALG00000016276
I
0.000
KHDRBS2
Gorilla gorilla
ENSGGOG00000025068
I
0.000
AGAP003356
Anopheles gambiae
AGAP003356
N
0.000