Q6GR16 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Q6GR16 T59741_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.823
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.823
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.823
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.784
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.770
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Q6GR16 RRM 13 83
Q6GR16 RRM 101 169
Q6GR16 RRM 193 262
Q6GR16 RRM 296 364

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

144 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ARB_00210 Arthroderma benhamiae ARB_00210 N 0.000
AFLA_080640 Aspergillus flavus CADAFLAG00000846 N 0.000
AFUA_1G02810 Aspergillus fumigatus CADAFUAG00008733 N 0.000
An01g05350 Aspergillus niger CADANGAG00000527 N 0.000
AO090005000813 Aspergillus oryzae CADAORAG00002768 N 0.000
ATEG_01945 Aspergillus terreus CADATEAG00008580 N 0.000
NFIA_021820 Neosartorya fischeri CADNFIAG00001277 N 0.000
gw1.00129.565.1 Aspergillus carbonarius gw1.00129.565.1 N 0.000
Pc22g25210 Penicillium chrysogenum Pc22g25210 N 0.000
ACLA_031620 Aspergillus clavatus CADACLAG00003000 N 0.000
UREG_06760 Uncinocarpus reesii UREG_06760 N 0.000
TRV_05203 Trichophyton verrucosum TRV_05203 N 0.000
BDBG_04496 Blastomyces dermatitidis BDBG_04496 N 0.000
CIMG_04751 Coccidioides immitis CIMG_04751 N 0.000
CPSG_07754 Coccidioides posadasii CPSG_07754 N 0.000
MCYG_05740 Microsporum canis MCYG_05740 N 0.000
MGYG_02843 Microsporum gypseum MGYG_02843 N 0.000
PABG_06223 Paracoccidioides brasiliensis PABG_06223 N 0.000
TEQG_00763 Trichophyton equinum TEQG_00763 N 0.000
TERG_06924 Trichophyton rubrum TERG_06924 N 0.000
PMAA_051450 Penicillium marneffei PMAA_051450 N 0.000