Q6GR16 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Q6GR16 T59741_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.823
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.823
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.823
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.784
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.770
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Q6GR16 RRM 13 83
Q6GR16 RRM 101 169
Q6GR16 RRM 193 262
Q6GR16 RRM 296 364

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

144 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC3 Homo sapiens ENSG00000151846 D 0.789
PABPC4 Homo sapiens ENSG00000090621 D 0.806
PABPC1 Homo sapiens ENSG00000070756 D 0.846
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.799
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.810
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.806
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.781
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.849
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.846
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.796
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.810
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.846
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.832
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.753
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.810
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.875
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.849
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.824
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.817
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.792
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.835
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.846
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.846
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.846
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.828
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.803
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.835
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.839
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.816
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.792
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.731
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.806
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.803
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.828
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.846
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.806
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.842
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.806
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.804
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.721
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.828
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.824
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.746
AAA60936 Xenopus laevis AAA60936 I 0.821
AAH52100 Xenopus laevis AAH52100 I 0.824
AAH71118 Xenopus laevis AAH71118 I 1.000
AAH72110 Xenopus laevis AAH72110 I 0.828
AAH73435 Xenopus laevis AAH73435 I 0.817
AAH80020 Xenopus laevis AAH80020 I 0.961
AAI08463 Xenopus laevis AAI08463 I 0.828
AAK29408 Xenopus laevis AAK29408 I 0.961
CAA40721 Xenopus laevis CAA40721 I 0.824
P20965 Xenopus laevis P20965 I 0.824
Q6IP09 Xenopus laevis Q6IP09 I 0.828
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.703
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.717
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.703
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.796
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.774
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.821
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.806
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.842
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.835
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.824
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.814
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.846
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.799
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.835
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.756
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.928
ISCW014211 Ixodes scapularis ISCW014211 I 0.708
PHUM617090 Pediculus humanus PHUM617090 I 0.703
Q98SP8 Xenopus laevis Q98SP8 I 0.961
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.710
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.846
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.821
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.817
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.814
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.814
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.710
pabpc1l Danio rerio ENSDARG00000002597 I 0.846
pabpc1a Danio rerio ENSDARG00000017219 I 0.835
pabpc1b Danio rerio ENSDARG00000021140 I 0.825
pabpc4 Danio rerio ENSDARG00000059259 I 0.810
LOC100054235 Equus caballus ENSECAG00000009396 I 0.810
LOC100056021 Equus caballus ENSECAG00000020699 I 0.731
LOC100070836 Equus caballus ENSECAG00000022681 I 0.821
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.806
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.799
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.803
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.717
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.828
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.721
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.721
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.721
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.710
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.710
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.710
AAEL010318 Aedes aegypti AAEL010318 I 0.707
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.710
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.763
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.892
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.849
PABPC1L Bos taurus ENSBTAG00000016849 I 0.835
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.810
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.846
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.810
PABPC1L Homo sapiens ENSG00000101104 I 0.828
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.853
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.832
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.846
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.799
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.843
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.756
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.860
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.824
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.811
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.803
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.849
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.789
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.799
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.778
Gm10110 Mus musculus ENSMUSG00000062093 I 0.806
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.849
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.814
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.832
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.832
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.810
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.810
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.810
PABPC4 Gallus gallus ENSGALG00000003800 I 0.817
PABPC1L Gallus gallus ENSGALG00000004123 I 0.910
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.806
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.828
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.810
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.824
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.846
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.842
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.910
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.810
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.821
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.710
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.781
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.713