PTBP1 (Macaca mulatta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMMUG00000016450 T38937_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.949
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.949
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.949
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000021611 RRM 77 133
ENSMMUP00000021611 RRM 202 260
ENSMMUP00000021612 RRM 12 71
ENSMMUP00000021612 RRM 122 187
ENSMMUP00000021615 RRM 60 116
ENSMMUP00000021615 RRM 185 242
ENSMMUP00000021615 RRM 359 425
ENSMMUP00000021615 RRM 476 540
ENSMMUP00000021616 RRM 60 116
ENSMMUP00000021616 RRM 185 242
ENSMMUP00000021616 RRM 333 399
ENSMMUP00000021616 RRM 450 514

Links

Other RRM family RBPs
Other Macaca mulatta RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A8R3Y9_BOVIN Bos taurus ENSBTAG00000008809 N 0.784
AAF00041 Xenopus laevis AAF00041 I 0.840
AAH45068 Xenopus laevis AAH45068 I 0.844
AAH97557 Xenopus laevis AAH97557 I 0.770
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.751
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.816
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.855
ENSOANG00000004292 Ornithorhynchus anatinus ENSOANG00000004292 N 0.724
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.751
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.949
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.747
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.752
LOC100057336 Equus caballus ENSECAG00000015783 I 0.748
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.902
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.910
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.887
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.790
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.898
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.887
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.875
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.759
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.765
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.762
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.789
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.732
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.887
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.910
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.906
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.922
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.863
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.774
PTBP1 Equus caballus ENSECAG00000018845 I 0.910
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.922
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.855
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.941
PTBP1 Homo sapiens ENSG00000011304 D 1.000
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.922
ptbp1a Danio rerio ENSDARG00000019362 I 0.790
ptbp1b Danio rerio ENSDARG00000031907 I 0.777
PTBP2 Procavia capensis ENSPCAG00000010292 N 0.734
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.751
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.705
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.710
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.751
PTBP2 Danio rerio ENSDARG00000015901 I 0.724
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.751
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.751
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.738
PTBP2 Tupaia belangeri ENSTBEG00000010797 N 0.734
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.743
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.751
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.722
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.723
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.751
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.751
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.751
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.755
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.746
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.735
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.751
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.708
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.747
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.755
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.751
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.751
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.755
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.751
PTBP2 Homo sapiens ENSG00000117569 I 0.751
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.898
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.755
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.747
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.701
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.735
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.759
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.705
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.743
ROD1 Bos taurus ENSBTAG00000016750 I 0.746
ROD1 Canis familiaris ENSCAFG00000003015 I 0.716
ROD1 Sus scrofa ENSSSCG00000005466 I 0.758
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.747
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.751
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.743
ROD1 Homo sapiens ENSG00000119314 I 0.747
Rod1 Mus musculus ENSMUSG00000028382 I 0.747
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.751
ROD1 Danio rerio ENSDARG00000043757 I 0.758
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.747
ROD1 Equus caballus ENSECAG00000021243 I 0.758
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.751
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.747
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 1.000