ppa005122m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa005122m T58351_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa005122m RRM 8 76
ppa005122m RRM 107 176

Links

Other RRM family RBPs
Other Prunus persica RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.842
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.835
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.856
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.784
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.842
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.856
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.784
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.842
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.813
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.871
PK25912.1 Cannabis sativa PK25912.1 N 0.950
PK13457.1 Cannabis sativa PK13457.1 N 0.842
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.849
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.835
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.906
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.705
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.878
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.906
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.906
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.914
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.914
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.885
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.899
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.835
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.885
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.730
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.907
MDP0000188788 Malus x domestica MDP0000188788 N 0.986
MDP0000204698 Malus x domestica MDP0000204698 N 0.993
MDP0000320618 Malus x domestica MDP0000320618 N 0.878
MDP0000609551 Malus x domestica MDP0000609551 N 0.986
MDP0000642684 Malus x domestica MDP0000642684 N 0.863
MDP0000907782 Malus x domestica MDP0000907782 N 0.871
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.878
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.935
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.871
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.856
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.871
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.885
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.770
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.863
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.914
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.863
mgf009385m Mimulus guttatus mgf009385m N 0.863
mgf009486m Mimulus guttatus mgf009486m N 0.800
mgf012147m Mimulus guttatus mgf012147m N 0.863
mgf004139m Mimulus guttatus mgf004139m N 0.806
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.806
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.806
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.879
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.858
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.906
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.899
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.856
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.914
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.885
ppa005309m Prunus persica ppa005309m N 0.705
ppa004834m Prunus persica ppa004834m N 1.000
ppa005119m Prunus persica ppa005119m N 0.885
ppa005132m Prunus persica ppa005132m N 0.885
29608.m000212 Ricinus communis 29608.m000212 N 0.871
27613.m000635 Ricinus communis 27613.m000635 N 0.928
30048.m000319 Ricinus communis 30048.m000319 N 0.892
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.719
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.777
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.719
SB02G005620 Sorghum bicolor Sb02g005620 N 0.813
SB05G025410 Sorghum bicolor Sb05g025410 N 0.748
SB02G037690 Sorghum bicolor Sb02g037690 N 0.806
SB02G005670 Sorghum bicolor Sb02g005670 N 0.813
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.705
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.719
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.878
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.942
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.705
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.806
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.791
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.791
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.799
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.799
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.705
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.705