CELF6 (Ornithorhynchus anatinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOANG00000011308 T39535_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.936
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.893
aret_CONSTRUCT
M229_0.6 		RNAcompete CONSTRUCTS UKUGUGU RNAcompete
Ray et al.(2013)
RNCMPT00270 		0.775
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.768
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000017917 RRM 9 78
ENSOANP00000017917 RRM 107 175
ENSOANP00000017917 RRM 377 425
ENSOANP00000017919 RRM 226 296
ENSOANP00000017921 RRM 5 73
ENSOANP00000017921 RRM 250 320

Links

Other RRM family RBPs
Other Ornithorhynchus anatinus RBPs

154 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
136083 Helobdella robusta 136083 I 0.817
62054 Helobdella robusta 62054 I 0.786
90208 Helobdella robusta 90208 I 0.780
AAA81375 Xenopus laevis AAA81375 I 0.758
AAEL003979 Aedes aegypti AAEL003979 I 0.915
AAEL014033 Aedes aegypti AAEL014033 I 0.871
AAH46942 Xenopus laevis AAH46942 I 0.749
AAH57704 Xenopus laevis AAH57704 I 0.758
AAH72134 Xenopus laevis AAH72134 I 0.758
ACH69784 Xenopus laevis ACH69784 I 0.937
ACH69785 Xenopus laevis ACH69785 I 0.773
AGAP004950 Anopheles gambiae AGAP004950 I 0.879
amel4_ncbi_hmm2201 Apis mellifera amel4_ncbi_hmm2201 I 0.803
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.864
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.739
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.777
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.773
BGIBMGA005893 Bombyx mori BGIBMGA005893 I 0.958
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.700
Bm1_27610 Brugia malayi Bm1_27610 I 0.706
CBG15358 Caenorhabditis briggsae CBG15358 I 0.700
CJA07020 Caenorhabditis japonica CJA07020 I 0.771
CRE09771 Caenorhabditis remanei CRE09771 I 0.700
CELF6 Anolis carolinensis ENSACAG00000006079 I 1.000
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.864
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.810
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.729
CELF6 Bos taurus ENSBTAG00000014092 I 0.777
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.739
CELF3 Canis familiaris ENSCAFG00000012794 I 0.739
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.739
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.857
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.857
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.845
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.936
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.739
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.857
CELF3 Danio rerio ENSDARG00000006983 I 0.733
celf3 Danio rerio ENSDARG00000034668 I 0.763
celf5 Danio rerio ENSDARG00000071375 I 0.777
ENSDARG00000076682 Danio rerio ENSDARG00000076682 I 0.822
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.711
CELF3 Equus caballus ENSECAG00000020365 I 0.739
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.721
CELF6 Felis catus ENSFCAG00000016249 I 0.777
BRUNOL4 Homo sapiens ENSG00000101489 D 0.936
BRUNOL6 Homo sapiens ENSG00000140488 D 0.930
CELF3 Homo sapiens ENSG00000159409 I 0.887
BRUNOL5 Homo sapiens ENSG00000161082 D 0.773
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.758
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.719
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.787
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.850
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.950
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.979
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.943
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.851
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.729
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.936
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.773
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.739
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.829
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.764
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.936
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.739
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.832
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.795
CELF4 Macaca mulatta ENSMMUG00000006866 I 0.789
HEXA Macaca mulatta ENSMMUG00000010687 I 0.930
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.915
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.936
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.739
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.864
Celf4 Mus musculus ENSMUSG00000024268 I 0.931
Celf3 Mus musculus ENSMUSG00000028137 I 0.739
Celf6 Mus musculus ENSMUSG00000032297 I 0.864
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.729
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.739
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.829
CELF4 Otolemur garnettii ENSOGAG00000010018 I 0.705
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.829
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.706
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.836
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.850
CELF5 Oryzias latipes ENSORLG00000004600 I 0.773
CELF4 Oryzias latipes ENSORLG00000008913 I 0.815
CELF3 Oryzias latipes ENSORLG00000010447 I 0.740
CELF6 Oryzias latipes ENSORLG00000013392 I 0.957
CELF3 Procavia capensis ENSPCAG00000001623 I 0.711
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.768
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.931
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.739
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.744
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.930
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.777
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.936
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.777
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.929
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.739
CELF6 Sus scrofa ENSSSCG00000001928 I 0.777
CELF3 Sus scrofa ENSSSCG00000006618 I 0.720
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.750
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.943
CELF3 Tetraodon nigroviridis ENSTNIG00000001919 I 0.930
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.787
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.857
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.798
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.850
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.950
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.773
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.791
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.857
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.768
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.931
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.763
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.834
ENSXETG00000021745 Xenopus tropicalis ENSXETG00000021745 I 0.915
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.779
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.707
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.773
e_gw.982.9.1 Nematostella vectensis e_gw.982.9.1 I 0.789
GF10965 Drosophila ananassae FBgn0088005 I 0.893
GF19661 Drosophila ananassae FBgn0096668 I 0.775
GG13757 Drosophila erecta FBgn0106020 I 0.893
GG23781 Drosophila erecta FBgn0115920 I 0.775
GH14684 Drosophila grimshawi FBgn0122160 I 0.900
GI13095 Drosophila mojavensis FBgn0135852 I 0.900
GI17947 Drosophila mojavensis FBgn0140687 I 0.761
GL21647 Drosophila persimilis FBgn0159240 I 0.857
GM24582 Drosophila sechellia FBgn0179445 I 0.893
GM26796 Drosophila sechellia FBgn0181649 I 0.775
GD12651 Drosophila simulans FBgn0184378 I 0.893
GD23834 Drosophila simulans FBgn0195204 I 0.775
GJ13842 Drosophila virilis FBgn0201061 I 0.900
GK17101 Drosophila willistoni FBgn0219100 I 0.893
GE20053 Drosophila yakuba FBgn0237378 I 0.893
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.879
bru-3 Drosophila melanogaster FBgn0262350 D 0.893
fgenesh2_pm.scaffold_186000008 Branchiostoma floridae fgenesh2_pm.scaffold_186000008 I 0.972
gw1.77.52.1 Daphnia pulex gw1.77.52.1 I 0.958
ISCW008885 Ixodes scapularis ISCW008885 I 0.789
ISCW010799 Ixodes scapularis ISCW010799 I 0.958
LOAG_05508 Loa loa LOAG_05508 I 0.807
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.857
NCBI_GNO_268900001 Daphnia pulex NCBI_GNO_268900001 I 0.958
PHUM315130 Pediculus humanus PHUM315130 I 0.907
Ppa-etr-1 Pristionchus pacificus PPA28330 I 0.718
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.749
Q91579 Xenopus laevis Q91579 I 0.758
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.764
Smp_041280 Schistosoma mansoni Smp_041280 I 0.829
Smp_131780 Schistosoma mansoni Smp_131780 I 0.779
SNAPOd2T00007754001 Oikopleura dioica SNAPOd2T00007754001 I 0.789
WUBG_04928 Wuchereria bancrofti WUBG_04928 I 0.901