PTBP1 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000019693 T35199_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.973
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.973
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.973
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000029146 RRM 62 118
ENSCAFP00000029146 RRM 187 253
ENSCAFP00000029146 RRM 366 432
ENSCAFP00000029146 RRM 483 547

Links

Other RRM family RBPs
Other Canis familiaris RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Homo sapiens ENSG00000011304 D 0.973
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.965
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.973
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.798
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.794
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.973
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.798
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.984
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.961
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.794
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.794
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.855
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.747
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.794
Rod1 Mus musculus ENSMUSG00000028382 I 0.805
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.794
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.918
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.794
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.802
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.819
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.765
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.809
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.805
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.795
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.794
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.977
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.794
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.794
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.805
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.840
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.794
AAF00041 Xenopus laevis AAF00041 I 0.895
AAH45068 Xenopus laevis AAH45068 I 0.895
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.817
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.794
Smptb Rattus norvegicus ENSRNOG00000028033 I 0.732
ROD1 Sus scrofa ENSSSCG00000005466 I 0.809
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.988
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.708
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.930
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.786
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.740
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.764
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.743
AAH97557 Xenopus laevis AAH97557 I 0.825
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.805
ptbp1b Danio rerio ENSDARG00000031907 I 0.828
ROD1 Danio rerio ENSDARG00000043757 I 0.801
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.910
LOC100057336 Equus caballus ENSECAG00000015783 I 0.791
PTBP1 Equus caballus ENSECAG00000018845 I 0.973
ROD1 Equus caballus ENSECAG00000021243 I 0.809
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.891
PTBP2 Homo sapiens ENSG00000117569 I 0.794
ROD1 Homo sapiens ENSG00000119314 I 0.798
ptbp1a Danio rerio ENSDARG00000019362 I 0.844
PTBP2 Danio rerio ENSDARG00000015901 I 0.762
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.802
ROD1 Bos taurus ENSBTAG00000016750 I 0.797
ROD1 Canis familiaris ENSCAFG00000003015 I 0.767
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.794
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.786
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.965
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.794
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.802
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.965
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.714
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.825
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.798
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.716
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.782
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.930
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.798
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.794
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.922
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.790
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.802
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.941
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.934
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.727
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.750
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.941
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.798
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.794
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.798
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.794
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.798
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.918
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.934