PABPC1L (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000011085 T42313_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.830
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.830
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.830
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.780
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.773
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000027983 RRM 13 83
ENSTRUP00000027983 RRM 101 169
ENSTRUP00000027983 RRM 193 262
ENSTRUP00000027983 RRM 296 364

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC4 Homo sapiens ENSG00000090621 D 0.796
PABPC1 Homo sapiens ENSG00000070756 D 0.853
PABPC3 Homo sapiens ENSG00000151846 D 0.799
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.853
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.853
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.857
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.742
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.806
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.796
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.799
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.774
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.799
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.853
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.792
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.713
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.789
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.806
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.796
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.857
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.785
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.810
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.792
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.853
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.853
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.778
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.796
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.846
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.835
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.873
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.785
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.717
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.796
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.821
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.774
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.853
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.796
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.778
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.849
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.839
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.731
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.835
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.785
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.738
AAA60936 Xenopus laevis AAA60936 I 0.828
AAH52100 Xenopus laevis AAH52100 I 0.832
AAH71118 Xenopus laevis AAH71118 I 0.842
AAH72110 Xenopus laevis AAH72110 I 0.835
AAH73435 Xenopus laevis AAH73435 I 0.799
AAH80020 Xenopus laevis AAH80020 I 0.849
AAI08463 Xenopus laevis AAI08463 I 0.835
AAK29408 Xenopus laevis AAK29408 I 0.849
CAA40721 Xenopus laevis CAA40721 I 0.832
P20965 Xenopus laevis P20965 I 0.832
Q6GR16 Xenopus laevis Q6GR16 I 0.842
Q6IP09 Xenopus laevis Q6IP09 I 0.835
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.724
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.707
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.811
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.785
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.890
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.835
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.785
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.842
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.832
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.756
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.853
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.756
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.835
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.742
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.824
ISCW014211 Ixodes scapularis ISCW014211 I 0.704
PHUM617090 Pediculus humanus PHUM617090 I 0.710
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.708
Q98SP8 Xenopus laevis Q98SP8 I 0.849
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.728
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.853
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.771
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.824
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.799
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.767
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.724
pabpc1l Danio rerio ENSDARG00000002597 I 0.896
pabpc1a Danio rerio ENSDARG00000017219 I 0.839
pabpc1b Danio rerio ENSDARG00000021140 I 0.839
pabpc4 Danio rerio ENSDARG00000059259 I 0.789
LOC100054235 Equus caballus ENSECAG00000009396 I 0.799
LOC100056021 Equus caballus ENSECAG00000020699 I 0.738
LOC100070836 Equus caballus ENSECAG00000022681 I 0.771
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.789
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.763
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.796
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.739
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.785
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.728
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.728
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.707
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.707
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.707
AAEL010318 Aedes aegypti AAEL010318 I 0.714
AGAP011092 Anopheles gambiae AGAP011092 I 0.728
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.721
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.735
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.839
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.857
PABPC1L Bos taurus ENSBTAG00000016849 I 0.789
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.799
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.853
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.799
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.721
PABPC1L Homo sapiens ENSG00000101104 I 0.774
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.950
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.853
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.814
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.850
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.763
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.703
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.828
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.824
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.782
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.785
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.857
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.792
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.806
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.742
Gm10110 Mus musculus ENSMUSG00000062093 I 0.789
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.857
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.778
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.796
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.771
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.842
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.828
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.785
PABPC4 Gallus gallus ENSGALG00000003800 I 0.796
PABPC1L Gallus gallus ENSGALG00000004123 I 0.821
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.796
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.774
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.799
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.781
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.853
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.814
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.824
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.799
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.785
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.724
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.789