cassava31392.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava31392.valid.m1 T49295_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava31392.valid.m1 RRM 8 76
cassava31392.valid.m1 RRM 108 177

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000635 Ricinus communis 27613.m000635 N 0.978
29608.m000212 Ricinus communis 29608.m000212 N 0.871
30008.m000830 Ricinus communis 30008.m000830 N 0.712
30048.m000319 Ricinus communis 30048.m000319 N 0.863
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.712
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.842
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.842
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.770
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.835
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.921
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.856
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.871
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.906
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.837
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.835
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.827
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.857
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.935
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.849
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.849
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.835
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.712
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.856
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.871
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.893
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.863
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.820
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.730
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.712
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.892
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.820
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.813
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.705
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.734
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.899
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.878
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.892
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.878
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.892
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.892
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.820
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.806
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.806
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.813
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.813
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.712
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.712
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.727
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.878
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.921
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.784
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.842
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.879
MDP0000188788 Malus x domestica MDP0000188788 N 0.921
MDP0000204698 Malus x domestica MDP0000204698 N 0.928
MDP0000320618 Malus x domestica MDP0000320618 N 0.892
MDP0000609551 Malus x domestica MDP0000609551 N 0.921
MDP0000642684 Malus x domestica MDP0000642684 N 0.885
MDP0000907782 Malus x domestica MDP0000907782 N 0.885
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.849
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.892
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.770
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.863
mgf004139m Mimulus guttatus mgf004139m N 0.806
mgf009385m Mimulus guttatus mgf009385m N 0.863
mgf009486m Mimulus guttatus mgf009486m N 0.786
mgf012147m Mimulus guttatus mgf012147m N 0.856
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.727
PK13457.1 Cannabis sativa PK13457.1 N 0.835
PK25912.1 Cannabis sativa PK25912.1 N 0.928
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.871
ppa004834m Prunus persica ppa004834m N 0.935
ppa005119m Prunus persica ppa005119m N 0.892
ppa005122m Prunus persica ppa005122m N 0.935
ppa005132m Prunus persica ppa005132m N 0.892
ppa005309m Prunus persica ppa005309m N 0.705
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.719
SB02G005620 Sorghum bicolor Sb02g005620 N 0.827
SB02G005670 Sorghum bicolor Sb02g005670 N 0.827
SB02G037690 Sorghum bicolor Sb02g037690 N 0.820
SB05G025410 Sorghum bicolor Sb05g025410 N 0.748
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.827
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.784
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.842
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.842