CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr2g030270
(
Medicago truncatula
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Medtr2g030270
T54449_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr2g030270.1
RRM
47
115
LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVE
Medtr2g030270.1
RRM
149
218
IFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVE
Medtr2g030270.2
RRM
1
39
MKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVE
Medtr2g030270.2
RRM
73
142
IFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVE
Medtr2g030270.3
RRM
38
107
IFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVE
Medtr2g030270.4
RRM
1
40
MYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Medicago truncatula
RBPs
86 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.856
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.827
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.806
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.835
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.820
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.857
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.835
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.856
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.791
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.850
PK13457.1
Cannabis sativa
PK13457.1
N
0.899
PK25912.1
Cannabis sativa
PK25912.1
N
0.878
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.878
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.878
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.863
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.878
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.842
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.885
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.856
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.849
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.842
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.820
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.843
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.827
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.957
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.752
MDP0000642684
Malus x domestica
MDP0000642684
N
0.863
MDP0000907782
Malus x domestica
MDP0000907782
N
0.878
MDP0000609551
Malus x domestica
MDP0000609551
N
0.863
MDP0000320618
Malus x domestica
MDP0000320618
N
0.878
MDP0000204698
Malus x domestica
MDP0000204698
N
0.871
MDP0000188788
Malus x domestica
MDP0000188788
N
0.863
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.799
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.906
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.849
cassava24411.valid.m1
Manihot esculenta
cassava24411.valid.m1
N
0.700
cassava24410.valid.m1
Manihot esculenta
cassava24410.valid.m1
N
0.700
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.921
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.935
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.935
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.835
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.784
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.871
mgf012147m
Mimulus guttatus
mgf012147m
N
0.878
mgf015744m
Mimulus guttatus
mgf015744m
N
0.725
mgf012866m
Mimulus guttatus
mgf012866m
N
0.725
mgf009486m
Mimulus guttatus
mgf009486m
N
0.850
mgf009385m
Mimulus guttatus
mgf009385m
N
0.899
mgf004139m
Mimulus guttatus
mgf004139m
N
0.856
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.799
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.850
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.799
PDK_20s1830981g001
Phoenix dactylifera
PDK_20s1830981g001
N
0.825
PDK_20s1768781g001
Phoenix dactylifera
PDK_20s1768781g001
N
0.914
PDK_20s1691521g001
Phoenix dactylifera
PDK_20s1691521g001
N
0.850
PDK_20s1332281g005
Phoenix dactylifera
PDK_20s1332281g005
N
0.757
PDK_20s1770661g001
Phoenix dactylifera
PDK_20s1770661g001
N
0.734
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.885
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.892
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.842
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.858
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.892
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.856
ppa005132m
Prunus persica
ppa005132m
N
0.885
ppa005122m
Prunus persica
ppa005122m
N
0.863
ppa005119m
Prunus persica
ppa005119m
N
0.885
ppa004834m
Prunus persica
ppa004834m
N
0.863
29608.m000212
Ricinus communis
29608.m000212
N
0.871
29637.m000760
Ricinus communis
29637.m000760
N
0.750
30048.m000319
Ricinus communis
30048.m000319
N
0.928
27613.m000635
Ricinus communis
27613.m000635
N
0.842
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.748
e_gw1.24.298.1
Selaginella moellendorfii
e_gw1.24.298.1
N
0.727
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.727
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.813
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.813
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.712
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.799
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.892
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.899
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.806
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.791
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.806
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.806
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.813