CELF6 (Pan troglodytes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPTRG00000034360 T40821_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.981
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.824
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.821
aret_CONSTRUCT
M229_0.6 		RNAcompete CONSTRUCTS UKUGUGU RNAcompete
Ray et al.(2013)
RNCMPT00270 		0.761
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.730
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000056433 RRM 219 289
ENSPTRP00000056773 RRM 1 69
ENSPTRP00000056773 RRM 88 155
ENSPTRP00000056773 RRM 347 417
ENSPTRP00000059665 RRM 23 90
ENSPTRP00000059665 RRM 282 352

Links

Other RRM family RBPs
Other Pan troglodytes RBPs

147 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
136083 Helobdella robusta 136083 I 0.761
62054 Helobdella robusta 62054 I 0.743
90208 Helobdella robusta 90208 I 0.709
AAA81375 Xenopus laevis AAA81375 I 0.810
AAEL003979 Aedes aegypti AAEL003979 I 0.859
AAEL014033 Aedes aegypti AAEL014033 I 0.807
AAH46942 Xenopus laevis AAH46942 I 0.800
AAH57704 Xenopus laevis AAH57704 I 0.810
AAH72134 Xenopus laevis AAH72134 I 0.810
ACH69784 Xenopus laevis ACH69784 I 0.735
ACH69785 Xenopus laevis ACH69785 I 0.810
AGAP004950 Anopheles gambiae AGAP004950 I 0.807
amel4_ncbi_hmm2201 Apis mellifera amel4_ncbi_hmm2201 I 0.775
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.786
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.805
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.981
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.829
BGIBMGA005893 Bombyx mori BGIBMGA005893 I 0.887
Bm1_27610 Brugia malayi Bm1_27610 I 0.752
unc-75 Caenorhabditis elegans C17D12.2 D 0.720
CBG15358 Caenorhabditis briggsae CBG15358 I 0.730
CJA07020 Caenorhabditis japonica CJA07020 I 0.729
CRE09771 Caenorhabditis remanei CRE09771 I 0.730
CELF6 Anolis carolinensis ENSACAG00000006079 I 0.930
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.814
CELF6 Bos taurus ENSBTAG00000014092 I 0.981
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.805
CELF3 Canis familiaris ENSCAFG00000012794 I 0.805
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.805
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.829
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.993
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.789
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.735
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.805
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.829
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.812
CELF3 Danio rerio ENSDARG00000006983 I 0.767
celf3 Danio rerio ENSDARG00000034668 I 0.786
celf5 Danio rerio ENSDARG00000071375 I 0.795
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.852
CELF3 Equus caballus ENSECAG00000020365 I 0.805
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.700
CELF6 Felis catus ENSFCAG00000016249 I 0.981
BRUNOL4 Homo sapiens ENSG00000101489 D 0.735
BRUNOL6 Homo sapiens ENSG00000140488 D 1.000
CELF3 Homo sapiens ENSG00000159409 I 0.845
BRUNOL5 Homo sapiens ENSG00000161082 D 0.824
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.800
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.711
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.819
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.800
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.850
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.850
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.821
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.809
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.735
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.986
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.805
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.793
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.967
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.833
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.805
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.795
HEXA Macaca mulatta ENSMMUG00000010687 I 1.000
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.859
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.724
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.885
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.805
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.829
Celf4 Mus musculus ENSMUSG00000024268 I 0.829
Celf3 Mus musculus ENSMUSG00000028137 I 0.805
Celf6 Mus musculus ENSMUSG00000032297 I 0.986
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.930
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.805
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.843
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.833
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.813
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.780
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.993
CELF5 Oryzias latipes ENSORLG00000004600 I 0.795
CELF4 Oryzias latipes ENSORLG00000008913 I 0.819
CELF3 Oryzias latipes ENSORLG00000010447 I 0.775
CELF6 Oryzias latipes ENSORLG00000013392 I 0.843
CELF3 Procavia capensis ENSPCAG00000001623 I 0.776
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.976
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.739
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.805
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.795
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.981
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.735
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.976
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.821
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.805
CELF6 Sus scrofa ENSSSCG00000001928 I 0.981
CELF3 Sus scrofa ENSSSCG00000006618 I 0.786
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.729
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.821
CELF3 Tetraodon nigroviridis ENSTNIG00000001919 I 0.873
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.819
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.807
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.814
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.850
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.800
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.805
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.807
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.763
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.730
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.800
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.829
ENSXETG00000021745 Xenopus tropicalis ENSXETG00000021745 I 0.859
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.741
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.795
e_gw.982.9.1 Nematostella vectensis e_gw.982.9.1 I 0.775
GF10965 Drosophila ananassae FBgn0088005 I 0.821
GF19661 Drosophila ananassae FBgn0096668 I 0.761
GG13757 Drosophila erecta FBgn0106020 I 0.821
GG23781 Drosophila erecta FBgn0115920 I 0.761
GH14684 Drosophila grimshawi FBgn0122160 I 0.829
GI13095 Drosophila mojavensis FBgn0135852 I 0.829
GI17947 Drosophila mojavensis FBgn0140687 I 0.746
GL21647 Drosophila persimilis FBgn0159240 I 0.813
GM24582 Drosophila sechellia FBgn0179445 I 0.821
GM26796 Drosophila sechellia FBgn0181649 I 0.761
GD12651 Drosophila simulans FBgn0184378 I 0.821
GD23834 Drosophila simulans FBgn0195204 I 0.761
GJ13842 Drosophila virilis FBgn0201061 I 0.829
GK17101 Drosophila willistoni FBgn0219100 I 0.829
GE20053 Drosophila yakuba FBgn0237378 I 0.821
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.821
bru-3 Drosophila melanogaster FBgn0262350 D 0.821
fgenesh2_pm.scaffold_186000008 Branchiostoma floridae fgenesh2_pm.scaffold_186000008 I 0.901
gw1.77.52.1 Daphnia pulex gw1.77.52.1 I 0.887
ISCW008885 Ixodes scapularis ISCW008885 I 0.789
ISCW010799 Ixodes scapularis ISCW010799 I 0.887
LOAG_05508 Loa loa LOAG_05508 I 0.743
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.771
NCBI_GNO_268900001 Daphnia pulex NCBI_GNO_268900001 I 0.887
PHUM315130 Pediculus humanus PHUM315130 I 0.821
Ppa-etr-1 Pristionchus pacificus PPA28330 I 0.718
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.800
Q91579 Xenopus laevis Q91579 I 0.810
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.729
Smp_041280 Schistosoma mansoni Smp_041280 I 0.807
Smp_131780 Schistosoma mansoni Smp_131780 I 0.750
SNAPOd2T00007754001 Oikopleura dioica SNAPOd2T00007754001 I 0.789
etr-1 Caenorhabditis elegans T01D1.2 D 0.718
WUBG_04928 Wuchereria bancrofti WUBG_04928 I 0.845