fgenesh1_pg.C_scaffold_1378000001 (Phytophthora ramorum)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_1378000001 T13761_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1378000001 CCHC ZF 255 272

Links

Other CCHC ZF family RBPs
Other Phytophthora ramorum RBPs

9 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29929.m004643 Ricinus communis 29929.m004643 N 0.000
29950.m001140 Ricinus communis 29950.m001140 N 0.000
30169.m006347 Ricinus communis 30169.m006347 N 0.000
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.000
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.000
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.000
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.000
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.000
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.000
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.000
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.000
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.000
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.000
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.000
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.000
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.000
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.000
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.000
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.000
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.000
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.000
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.000
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.000
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.000
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.000
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.000
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.000
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.000
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.000
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.000
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.000
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.000
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.000
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.000
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.000
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.000
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.000
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.000
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.000
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.000
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.000
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.000
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.000
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.000
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.000
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.000
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.000
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.000
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.000
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.000
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.000
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.000
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.000
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.000
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.000
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.000
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.000
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.000
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.000
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.000
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.000
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.000
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.000
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.000
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.000
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.000
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.000
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.000
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.000
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.000
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.000
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.000
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.000
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.000
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.000
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.000
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.000
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.000
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.000
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.000
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.000
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.000
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.000
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.000
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.000
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.000
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.000
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.000
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.000
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.000
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.000
MDP0000124048 Malus x domestica MDP0000124048 N 0.000
MDP0000129009 Malus x domestica MDP0000129009 N 0.000
MDP0000132385 Malus x domestica MDP0000132385 N 0.000
MDP0000171737 Malus x domestica MDP0000171737 N 0.000
MDP0000231231 Malus x domestica MDP0000231231 N 0.000
MDP0000248088 Malus x domestica MDP0000248088 N 0.000
MDP0000286471 Malus x domestica MDP0000286471 N 0.000
MDP0000287088 Malus x domestica MDP0000287088 N 0.000
MDP0000306387 Malus x domestica MDP0000306387 N 0.000
MDP0000405927 Malus x domestica MDP0000405927 N 0.000
MDP0000488588 Malus x domestica MDP0000488588 N 0.000
MDP0000552419 Malus x domestica MDP0000552419 N 0.000
MDP0000617859 Malus x domestica MDP0000617859 N 0.000
MDP0000718677 Malus x domestica MDP0000718677 N 0.000
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.000
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.000
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.000
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.000
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.000
mgf009938m Mimulus guttatus mgf009938m N 0.000
mgf013853m Mimulus guttatus mgf013853m N 0.000
mgf013935m Mimulus guttatus mgf013935m N 0.000
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.000
PK02315.1 Cannabis sativa PK02315.1 N 0.000
PK17832.1 Cannabis sativa PK17832.1 N 0.000
PK23104.1 Cannabis sativa PK23104.1 N 0.000
PK23716.1 Cannabis sativa PK23716.1 N 0.000
ppa002483m Prunus persica ppa002483m N 0.000
ppa002588m Prunus persica ppa002588m N 0.000
ppa003664m Prunus persica ppa003664m N 0.000
ppa018635m Prunus persica ppa018635m N 0.000
SB01G005500 Sorghum bicolor Sb01g005500 N 0.000
SB01G008170 Sorghum bicolor Sb01g008170 N 0.000
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.000
SB02G003990 Sorghum bicolor Sb02g003990 N 0.000
SB06G027960 Sorghum bicolor Sb06g027960 N 0.000
SB07G006330 Sorghum bicolor Sb07g006330 N 0.000
SB07G024500 Sorghum bicolor Sb07g024500 N 0.000
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.000
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.000
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.000
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.000
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.000
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.000
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.000