PTBP1 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000020162 T35679_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.992
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.992
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.992
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000037520 RRM 24 65
ENSCJAP00000037520 RRM 148 214
ENSCJAP00000037520 RRM 308 374
ENSCJAP00000037520 RRM 425 489
ENSCJAP00000037537 RRM 61 117
ENSCJAP00000037537 RRM 186 252
ENSCJAP00000037537 RRM 365 431
ENSCJAP00000037537 RRM 482 546
ENSCJAP00000037547 RRM 61 103
ENSCJAP00000037547 RRM 182 248
ENSCJAP00000037547 RRM 361 427
ENSCJAP00000037547 RRM 478 542
ENSCJAP00000042607 RRM 53 109
ENSCJAP00000042607 RRM 177 243
ENSCJAP00000042607 RRM 335 401
ENSCJAP00000042607 RRM 452 516

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAF00041 Xenopus laevis AAF00041 I 0.883
AAH45068 Xenopus laevis AAH45068 I 0.887
AAH97557 Xenopus laevis AAH97557 I 0.813
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.790
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.794
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.782
ROD1 Bos taurus ENSBTAG00000016750 I 0.785
ROD1 Canis familiaris ENSCAFG00000003015 I 0.760
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.965
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.790
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.774
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.790
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.790
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.965
PTBP2 Danio rerio ENSDARG00000015901 I 0.766
ptbp1a Danio rerio ENSDARG00000019362 I 0.837
ptbp1b Danio rerio ENSDARG00000031907 I 0.812
ROD1 Danio rerio ENSDARG00000043757 I 0.793
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.723
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.902
LOC100057336 Equus caballus ENSECAG00000015783 I 0.787
PTBP1 Equus caballus ENSECAG00000018845 I 0.941
ROD1 Equus caballus ENSECAG00000021243 I 0.797
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.859
PTBP1 Homo sapiens ENSG00000011304 D 0.992
PTBP2 Homo sapiens ENSG00000117569 I 0.790
ROD1 Homo sapiens ENSG00000119314 I 0.786
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.714
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.821
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.719
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.746
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.941
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.794
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.790
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.786
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.782
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.794
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.891
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.930
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.941
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.794
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.712
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.774
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.898
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.786
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.790
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.941
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.790
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.790
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.930
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.953
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.790
Rod1 Mus musculus ENSMUSG00000028382 I 0.786
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.790
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.918
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.790
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.790
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.812
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.762
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.801
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.739
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.832
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.790
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.992
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.786
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.790
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.992
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.786
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.953
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.949
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.790
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.786
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.779
Smptb Rattus norvegicus ENSRNOG00000028033 I 0.724
ROD1 Sus scrofa ENSSSCG00000005466 I 0.797
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.965
PTBP1 Spermophilus tridecemlineatus ENSSTOG00000000034 I 0.707
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.704
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.938
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.790
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.736
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.757
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.739
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.774
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.805
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.790
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.945
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.790
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.790
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.798
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.885