CELF6 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000001784 T39046_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.900
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.871
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.857
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.824
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000002180 RRM 17 86
ENSMODP00000002180 RRM 105 172
ENSMODP00000002180 RRM 389 459
ENSMODP00000002181 RRM 21 88
ENSMODP00000002181 RRM 265 335
ENSMODP00000036723 RRM 27 96
ENSMODP00000036723 RRM 126 193
ENSMODP00000036723 RRM 364 413
ENSMODP00000036724 RRM 27 96
ENSMODP00000036724 RRM 126 193
ENSMODP00000036724 RRM 391 452

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62054 Helobdella robusta 62054 I 0.750
90208 Helobdella robusta 90208 I 0.745
AAA81375 Xenopus laevis AAA81375 I 0.857
AAEL014033 Aedes aegypti AAEL014033 I 0.864
AAH46942 Xenopus laevis AAH46942 I 0.848
AAH57704 Xenopus laevis AAH57704 I 0.857
AAH72134 Xenopus laevis AAH72134 I 0.857
ACH69784 Xenopus laevis ACH69784 I 0.842
ACH69785 Xenopus laevis ACH69785 I 0.852
AGAP004950 Anopheles gambiae AGAP004950 I 0.871
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.843
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.838
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.904
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.867
Bm1_27610 Brugia malayi Bm1_27610 I 0.790
unc-75 Caenorhabditis elegans C17D12.2 D 0.739
CBG15358 Caenorhabditis briggsae CBG15358 I 0.749
CJA07020 Caenorhabditis japonica CJA07020 I 0.729
CRE09771 Caenorhabditis remanei CRE09771 I 0.749
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.857
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.743
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.707
CELF6 Bos taurus ENSBTAG00000014092 I 0.904
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.838
CELF3 Canis familiaris ENSCAFG00000012794 I 0.838
CELF5 Canis familiaris ENSCAFG00000019263 I 0.700
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.706
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.838
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.857
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.900
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.707
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.842
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.838
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.857
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.732
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.711
CELF3 Danio rerio ENSDARG00000006983 I 0.824
celf3 Danio rerio ENSDARG00000034668 I 0.838
celf4 Danio rerio ENSDARG00000070045 I 0.705
celf5 Danio rerio ENSDARG00000071375 I 0.862
ENSDARG00000076682 Danio rerio ENSDARG00000076682 I 0.745
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.814
CELF3 Equus caballus ENSECAG00000020365 I 0.838
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.736
CELF6 Felis catus ENSFCAG00000016249 I 0.904
BRUNOL4 Homo sapiens ENSG00000101489 D 0.842
BRUNOL6 Homo sapiens ENSG00000140488 D 0.900
CELF3 Homo sapiens ENSG00000159409 I 0.838
BRUNOL5 Homo sapiens ENSG00000161082 D 0.857
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.848
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.782
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.881
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.850
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.907
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.914
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.900
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.837
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.707
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.842
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.900
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.838
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.829
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.882
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.919
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.838
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.878
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.730
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.700
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.852
CELF4 Macaca mulatta ENSMMUG00000006866 I 0.714
HEXA Macaca mulatta ENSMMUG00000010687 I 0.900
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.707
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.748
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.838
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.857
Celf4 Mus musculus ENSMUSG00000024268 I 0.914
Celf3 Mus musculus ENSMUSG00000028137 I 0.838
Celf6 Mus musculus ENSMUSG00000032297 I 0.895
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.936
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.707
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.838
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.795
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.919
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.842
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.813
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.759
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.892
CELF3 Oryzias latipes ENSORLG00000002630 I 0.725
CELF5 Oryzias latipes ENSORLG00000004600 I 0.857
CELF4 Oryzias latipes ENSORLG00000008913 I 0.890
CELF3 Oryzias latipes ENSORLG00000010447 I 0.830
CELF6 Oryzias latipes ENSORLG00000013392 I 0.914
CELF3 Procavia capensis ENSPCAG00000001623 I 0.810
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.895
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.847
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.838
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.829
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.885
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.904
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.842
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.895
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.900
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.838
CELF6 Sus scrofa ENSSSCG00000001928 I 0.904
CELF3 Sus scrofa ENSSSCG00000006618 I 0.819
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.764
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.700
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.900
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.881
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.857
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.714
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.836
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.907
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.862
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.876
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.857
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.798
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.837
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.843
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.914
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.777
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.857
GF10965 Drosophila ananassae FBgn0088005 I 0.871
GG13757 Drosophila erecta FBgn0106020 I 0.871
GH14684 Drosophila grimshawi FBgn0122160 I 0.864
GI13095 Drosophila mojavensis FBgn0135852 I 0.864
GL21647 Drosophila persimilis FBgn0159240 I 0.863
GM24582 Drosophila sechellia FBgn0179445 I 0.871
GD12651 Drosophila simulans FBgn0184378 I 0.871
GJ13842 Drosophila virilis FBgn0201061 I 0.864
GK17101 Drosophila willistoni FBgn0219100 I 0.871
GE20053 Drosophila yakuba FBgn0237378 I 0.871
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.871
bru-3 Drosophila melanogaster FBgn0262350 D 0.871
LOAG_05508 Loa loa LOAG_05508 I 0.786
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.829
PHUM315130 Pediculus humanus PHUM315130 I 0.886
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.848
Q91579 Xenopus laevis Q91579 I 0.857
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.764
Smp_041280 Schistosoma mansoni Smp_041280 I 0.843
Smp_131780 Schistosoma mansoni Smp_131780 I 0.771
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.745
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.745