amel4_ncbi_hmm2036 (Apis mellifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 amel4_ncbi_hmm2036 T31877_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.766
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.757
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.757
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.757
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.743
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.711
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm2036 RRM 13 83
amel4_ncbi_hmm2036 RRM 101 170
amel4_ncbi_hmm2036 RRM 194 263
amel4_ncbi_hmm2036 RRM 298 366

Links

Other RRM family RBPs
Other Apis mellifera RBPs

144 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC3 Homo sapiens ENSG00000151846 D 0.717
PABPC4 Homo sapiens ENSG00000090621 D 0.753
PABPC1 Homo sapiens ENSG00000070756 D 0.767
pAbp Drosophila melanogaster FBgn0261619 D 0.779
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.770
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.728
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.749
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.763
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.746
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.740
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.749
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.767
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.777
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.714
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.798
GF12652 Drosophila ananassae FBgn0089688 I 0.784
GG21846 Drosophila erecta FBgn0114024 I 0.779
GH21052 Drosophila grimshawi FBgn0128514 I 0.791
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.763
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.770
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.753
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.731
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.767
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.753
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.763
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.724
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.767
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.770
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.728
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.753
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.707
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.731
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.753
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.767
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.703
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.756
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.713
GI18654 Drosophila mojavensis FBgn0141393 I 0.805
GL11548 Drosophila persimilis FBgn0149157 I 0.798
GM21847 Drosophila sechellia FBgn0176724 I 0.779
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.730
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.730
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.755
AAA60936 Xenopus laevis AAA60936 I 0.777
AAH52100 Xenopus laevis AAH52100 I 0.781
AAH71118 Xenopus laevis AAH71118 I 0.721
AAH72110 Xenopus laevis AAH72110 I 0.770
AAH73435 Xenopus laevis AAH73435 I 0.756
AAH80020 Xenopus laevis AAH80020 I 0.724
AAI08463 Xenopus laevis AAI08463 I 0.770
AAK29408 Xenopus laevis AAK29408 I 0.724
CAA40721 Xenopus laevis CAA40721 I 0.781
P20965 Xenopus laevis P20965 I 0.781
Q6GR16 Xenopus laevis Q6GR16 I 0.721
Q6IP09 Xenopus laevis Q6IP09 I 0.770
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.755
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.746
GD11341 Drosophila simulans FBgn0183090 I 0.777
GJ21671 Drosophila virilis FBgn0208790 I 0.794
GK19652 Drosophila willistoni FBgn0221650 I 0.791
GE11925 Drosophila yakuba FBgn0229707 I 0.786
ISCW014211 Ixodes scapularis ISCW014211 I 0.805
PHUM617090 Pediculus humanus PHUM617090 I 0.865
185682 Helobdella robusta 185682 I 0.719
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.784
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.747
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.765
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.790
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.730
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.730
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.765
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.883
Q98SP8 Xenopus laevis Q98SP8 I 0.724
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.756
Bm1_16080 Brugia malayi Bm1_16080 I 0.716
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.767
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.753
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.714
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.753
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.767
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.746
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.753
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.701
pabpc1l Danio rerio ENSDARG00000002597 I 0.710
pabpc1a Danio rerio ENSDARG00000017219 I 0.774
pabpc1b Danio rerio ENSDARG00000021140 I 0.771
pabpc4 Danio rerio ENSDARG00000059259 I 0.756
LOC100054235 Equus caballus ENSECAG00000009396 I 0.753
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.753
Bm1_06880 Brugia malayi Bm1_06880 I 0.716
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.753
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.770
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.868
LOAG_01058 Loa loa LOAG_01058 I 0.716
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 1.000
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 1.000
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.786
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.811
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.779
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.925
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.925
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.925
AAEL010318 Aedes aegypti AAEL010318 I 0.879
AGAP011092 Anopheles gambiae AGAP011092 I 0.854
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.868
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.707
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.721
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.728
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.767
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.774
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.750
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.746
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.770
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.707
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.731
Gm10110 Mus musculus ENSMUSG00000062093 I 0.749
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.770
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.756
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.749
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.767
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.767
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.767
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.749
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.767
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.753
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.746
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.710
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.756
PABPC4 Gallus gallus ENSGALG00000003800 I 0.753
PABPC1L Gallus gallus ENSGALG00000004123 I 0.717
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.753
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.753
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.767
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.707
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.717
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.753
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.735
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.753
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.767
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.728
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.767
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.714
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.704
CBG07431 Caenorhabditis briggsae CBG07431 N 0.702