Pabpc6 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000046173 T39367_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.928
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.928
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.928
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.882
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.821
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000050792 RRM 13 83
ENSMUSP00000050792 RRM 101 169
ENSMUSP00000050792 RRM 193 262
ENSMUSP00000050792 RRM 306 374

Links

Other RRM family RBPs
Other Mus musculus RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1 Homo sapiens ENSG00000070756 D 0.928
PABPC4 Homo sapiens ENSG00000090621 D 0.821
PABPC3 Homo sapiens ENSG00000151846 D 0.882
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.824
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.806
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.982
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.824
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.867
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.710
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.928
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.703
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.763
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.703
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.835
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.785
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.925
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.867
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.925
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.928
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.753
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.928
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.753
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.824
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.882
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.849
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.756
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.806
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.735
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.821
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.892
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.753
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.928
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.821
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.749
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.925
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.882
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.842
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.806
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.721
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.907
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.767
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.756
AAA60936 Xenopus laevis AAA60936 I 0.875
AAH52100 Xenopus laevis AAH52100 I 0.878
AAH71118 Xenopus laevis AAH71118 I 0.789
AAH72110 Xenopus laevis AAH72110 I 0.885
AAH73435 Xenopus laevis AAH73435 I 0.839
AAH80020 Xenopus laevis AAH80020 I 0.789
AAI08463 Xenopus laevis AAI08463 I 0.885
AAK29408 Xenopus laevis AAK29408 I 0.789
CAA40721 Xenopus laevis CAA40721 I 0.878
P20965 Xenopus laevis P20965 I 0.878
Q6GR16 Xenopus laevis Q6GR16 I 0.789
Q6IP09 Xenopus laevis Q6IP09 I 0.885
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.717
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.703
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.864
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.810
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.792
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.875
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.907
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.749
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.928
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.738
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.900
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.774
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.771
ISCW014211 Ixodes scapularis ISCW014211 I 0.711
PHUM617090 Pediculus humanus PHUM617090 I 0.703
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.703
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.724
Q98SP8 Xenopus laevis Q98SP8 I 0.789
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.707
pabpc1l Danio rerio ENSDARG00000002597 I 0.781
pabpc1a Danio rerio ENSDARG00000017219 I 0.875
pabpc1b Danio rerio ENSDARG00000021140 I 0.861
pabpc4 Danio rerio ENSDARG00000059259 I 0.817
LOC100054235 Equus caballus ENSECAG00000009396 I 0.824
LOC100056021 Equus caballus ENSECAG00000020699 I 0.814
LOC100070836 Equus caballus ENSECAG00000022681 I 0.753
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.817
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.753
PABPC1L Homo sapiens ENSG00000101104 I 0.753
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.799
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.878
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.849
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.806
PABPC4 Gallus gallus ENSGALG00000003800 I 0.839
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.753
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.828
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.707
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.707
AGAP011092 Anopheles gambiae AGAP011092 I 0.707
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.781
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.806
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.925
PABPC1L Bos taurus ENSBTAG00000016849 I 0.771
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.824
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.928
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.824
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.763
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.821
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.928
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.742
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.896
PABPC1L Gallus gallus ENSGALG00000004123 I 0.810
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.821
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.753
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.814
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.728
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.778
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.878
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.829
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.814
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.925
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.867
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.713
Gm10110 Mus musculus ENSMUSG00000062093 I 0.817
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.925
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.835
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.828
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.763
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.928
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.731
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.918
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.768
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.824
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.760
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.928
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.753
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.814
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.824
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.753
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.749
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.789
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.728
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.824
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.756
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.928
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.892
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.928