XM_002885156.1 (Arabidopsis lyrata)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Al_scaffold_0003_1823 T61925_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0003_1823 YTH 349 439

Links

Other YTH family RBPs
Other Arabidopsis lyrata RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.857
mgf013853m Mimulus guttatus mgf013853m N 0.714
mgf014143m Mimulus guttatus mgf014143m N 0.835
mgf014829m Mimulus guttatus mgf014829m N 0.714
mgf015583m Mimulus guttatus mgf015583m N 0.835
mgf017987m Mimulus guttatus mgf017987m N 0.824
mgf019821m Mimulus guttatus mgf019821m N 0.747
mgf019846m Mimulus guttatus mgf019846m N 0.703
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.736
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.758
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.758
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
mgf001716m Mimulus guttatus mgf001716m N 0.714
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.736
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.835
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.813
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.725
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.780
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.791
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.835
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.725
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.824
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.725
MDP0000306387 Malus x domestica MDP0000306387 N 0.813
MDP0000405927 Malus x domestica MDP0000405927 N 0.758
MDP0000552419 Malus x domestica MDP0000552419 N 0.758
MDP0000617859 Malus x domestica MDP0000617859 N 0.758
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.703
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.780
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.703
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.714
ppa002483m Prunus persica ppa002483m N 0.747
ppa002588m Prunus persica ppa002588m N 0.747
ppa002677m Prunus persica ppa002677m N 0.703
ppa003664m Prunus persica ppa003664m N 0.758
MDP0000287088 Malus x domestica MDP0000287088 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.758
MDP0000256033 Malus x domestica MDP0000256033 N 0.714
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.769
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.813
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.758
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.835
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.714
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.725
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.813
MDP0000171737 Malus x domestica MDP0000171737 N 0.747
MDP0000199885 Malus x domestica MDP0000199885 N 0.714
MDP0000231231 Malus x domestica MDP0000231231 N 0.758
MDP0000248088 Malus x domestica MDP0000248088 N 0.758
ppa018635m Prunus persica ppa018635m N 0.835
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.857
PK01736.1 Cannabis sativa PK01736.1 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.769
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.736
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.736
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.923
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.747
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.758
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.703
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.714
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.857
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.725
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.736
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.780
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.725
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
PK02315.1 Cannabis sativa PK02315.1 N 0.813
PK05579.1 Cannabis sativa PK05579.1 N 0.714
PK17832.1 Cannabis sativa PK17832.1 N 0.747
PK23104.1 Cannabis sativa PK23104.1 N 0.758
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.923
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.747
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.758
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.967
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.769
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.802
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.769
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.802
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
29890.m000285 Ricinus communis 29890.m000285 N 0.714
29929.m004643 Ricinus communis 29929.m004643 N 0.736
29955.m001158 Ricinus communis 29955.m001158 N 0.747
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.736
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.714
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.714
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.714
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.747
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.747
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.747
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.747
29889.m003364 Ricinus communis 29889.m003364 N 0.846
SB07G024500 Sorghum bicolor Sb07g024500 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.725
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.758
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.758
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.736
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.857
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.846
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.736
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.747
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.758
SB06G027960 Sorghum bicolor Sb06g027960 N 0.725
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.747