ENSPPYG00000001012 (Pongo pygmaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPPYG00000001012 T40425_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.843
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.843
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.843
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.821
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000001180 RRM 14 83
ENSPPYP00000001180 RRM 105 173

Links

Other RRM family RBPs
Other Pongo pygmaeus RBPs

227 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.787
AAA49742 Xenopus laevis AAA49742 I 0.787
AAA49949 Xenopus laevis AAA49949 I 0.901
AAA49950 Xenopus laevis AAA49950 I 0.895
AAH45260 Xenopus laevis AAH45260 I 0.801
AAH72090 Xenopus laevis AAH72090 I 0.801
AAI69881 Xenopus laevis AAI69881 I 0.895
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.830
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.856
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.739
CBF67555 Xenopus laevis CBF67555 I 0.787
CBF67578 Xenopus laevis CBF67578 I 0.895
CBF67672 Xenopus laevis CBF67672 I 0.801
CBU92428 Xenopus laevis CBU92428 I 0.787
CBU92451 Xenopus laevis CBU92451 I 0.895
CBU92546 Xenopus laevis CBU92546 I 0.801
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.715
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.748
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.738
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.922
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.915
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.859
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.936
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.787
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.794
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.703
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.752
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.713
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.754
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.837
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.713
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.746
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.718
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.734
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.720
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.739
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.722
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.787
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.732
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.729
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.701
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.816
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.755
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.937
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.746
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.748
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.728
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.734
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.748
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.743
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.727
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.736
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.722
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.739
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.761
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.755
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.725
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.775
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.851
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.725
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.935
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.780
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.768
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.761
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.725
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.830
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.746
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.801
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.773
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.738
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.830
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.761
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.944
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.809
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.830
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.852
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.794
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.725
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.816
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.704
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.704
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.761
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.830
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.830
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.801
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.865
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.704
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.816
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.844
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.754
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.725
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.816
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.837
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.809
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.817
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.720
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.830
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.748
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.816
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.937
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.782
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.725
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.761
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.707
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.727
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.732
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.809
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.742
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.823
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.830
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.809
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.816
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.823
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.768
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.816
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.823
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.823
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.830
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.837
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.809
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.823
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.794
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.723
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.772
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.887
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.830
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.787
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.844
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.830
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.787
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.754
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.880
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.739
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.757
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.748
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.851
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.776
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.745
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.794
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.737
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.727
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.716
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.759
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.709
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.830
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.859
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.746
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.830
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.754
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.789
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.787
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.830
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.729
Gm8991 Mus musculus ENSMUSG00000059179 I 0.936
HNRNPA1 Homo sapiens ENSG00000135486 D 0.830
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.830
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.752
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.759
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.830
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.809
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.830
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.809
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.830
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.936
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.937
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.930
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.936
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.937
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.853
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.937
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.937
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.937
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.908
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.887
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.943
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.937
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.859
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.937
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.943
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.776
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.937
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.780
HNRNPA3 Homo sapiens ENSG00000170144 I 0.937
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.769
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.937
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.809
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.937
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.937
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.936
LOC100054206 Equus caballus ENSECAG00000006699 I 0.755
LOC100066794 Equus caballus ENSECAG00000023237 I 0.943
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.937
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.768
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.830
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.830
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.809
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.809
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.937
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.809
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.830
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.837
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.809
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.823
LOC781499 Bos taurus ENSBTAG00000021580 I 0.937
LOC785445 Bos taurus ENSBTAG00000025621 I 0.789
P17130 Xenopus laevis P17130 I 0.787
P51968 Xenopus laevis P51968 I 0.901
P51992 Xenopus laevis P51992 I 0.895
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.783
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.787
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.830
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.830
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.809
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.830
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.830
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.830
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.937
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.727
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.830
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.713
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.809
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.787
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.787
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.782
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.739
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.727
zgc:66127 Danio rerio ENSDARG00000011020 I 0.730