ppa009564m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa009564m T58411_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa009564m RRM 18 79

Links

Other RRM family RBPs
Other Prunus persica RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29908.m006046 Ricinus communis 29908.m006046 I 0.000
29983.m003293 Ricinus communis 29983.m003293 I 0.785
30076.m004440 Ricinus communis 30076.m004440 I 0.706
30170.m013735 Ricinus communis 30170.m013735 I 0.935
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.706
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.774
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.000
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.706
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.000
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.710
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.765
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.706
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.000
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.750
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.871
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.000
BGIOSIBCE008701 Oryza indica BGIOSIBCE008701 I 0.000
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.000
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.855
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.000
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.000
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.000
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.000
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.721
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.721
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.000
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.000
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.968
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.968
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.765
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.839
CU179634_3 Medicago truncatula CU179634_3 I 0.716
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.750
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.000
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.903
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.000
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.000
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.806
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.761
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.000
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.000
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.761
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.000
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.000
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.000
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.706
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.000
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.000
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.000
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.706
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.887
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.871
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.000
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.000
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.000
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.000
GRMZM2G180639 Zea mays GRMZM2G180639 N 0.000
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.000
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.000
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.806
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.000
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.721
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.000
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.721
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.721
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.968
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.871
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.000
LOC_Os02g51890 Oryza sativa LOC_Os02g51890 I 0.000
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.000
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.000
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.000
MDP0000118777 Malus x domestica MDP0000118777 I 0.000
MDP0000134468 Malus x domestica MDP0000134468 I 0.000
MDP0000181802 Malus x domestica MDP0000181802 N 0.968
MDP0000184420 Malus x domestica MDP0000184420 I 0.000
MDP0000233609 Malus x domestica MDP0000233609 I 0.000
MDP0000271231 Malus x domestica MDP0000271231 N 0.968
MDP0000284454 Malus x domestica MDP0000284454 I 0.721
MDP0000488395 Malus x domestica MDP0000488395 I 0.721
MDP0000548950 Malus x domestica MDP0000548950 I 0.735
MDP0000744398 Malus x domestica MDP0000744398 I 0.735
MDP0000857317 Malus x domestica MDP0000857317 I 0.000
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.000
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.761
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.000
mgf002440m Mimulus guttatus mgf002440m N 0.871
mgf017214m Mimulus guttatus mgf017214m I 0.735
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.871
PK14266.1 Cannabis sativa PK14266.1 I 0.735
PK15672.1 Cannabis sativa PK15672.1 I 0.000
PK21213.1 Cannabis sativa PK21213.1 I 0.761
ppa009716m Prunus persica ppa009716m I 0.735
ppa009964m Prunus persica ppa009964m I 0.000
ppa016222m Prunus persica ppa016222m I 0.750
ppa018603m Prunus persica ppa018603m I 0.000
ppa018926m Prunus persica ppa018926m I 0.000
ppa019392m Prunus persica ppa019392m I 0.000
SB03G041530 Sorghum bicolor Sb03g041530 I 0.871
SB04G030020 Sorghum bicolor Sb04g030020 I 0.000
SB10G024450 Sorghum bicolor Sb10g024450 N 0.000
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.000
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.000
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.721
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.000
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.806
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.774