ENSCJAG00000017130 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000017130 T35642_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.872
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.872
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.872
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.858
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000031480 RRM 5 74
ENSCJAP00000031480 RRM 96 165

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

225 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.872
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.814
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.858
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.773
LOC781499 Bos taurus ENSBTAG00000021580 I 0.768
LOC785445 Bos taurus ENSBTAG00000025621 I 0.843
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.872
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.701
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.702
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.858
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.829
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.740
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.736
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.722
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.858
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.865
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.858
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.807
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.803
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.754
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.821
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.718
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.823
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.768
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.800
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.816
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.844
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.872
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.879
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.800
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.858
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.872
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.872
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.821
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.836
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.864
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.779
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.872
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.779
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.793
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.783
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.775
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.816
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.844
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.707
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.814
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.801
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.776
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.786
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.775
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.837
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.782
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.768
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.768
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.814
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.721
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.804
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.741
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.731
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.761
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.796
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.797
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.775
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.775
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.703
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.748
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.786
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.796
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.731
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.768
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.810
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.858
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.715
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.830
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.844
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.768
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.768
zgc:66127 Danio rerio ENSDARG00000011020 I 0.709
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.730
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.709
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.872
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.768
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.787
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.807
LOC100066794 Equus caballus ENSECAG00000023237 I 0.766
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.872
LOC100054206 Equus caballus ENSECAG00000006699 I 0.803
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.750
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.750
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.865
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.823
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.872
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.766
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.766
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.787
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.702
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.768
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.793
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.709
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.857
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.814
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.872
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.872
HNRNPA3 Homo sapiens ENSG00000170144 I 0.768
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.710
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.872
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.858
HNRNPA1 Homo sapiens ENSG00000135486 D 0.872
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.830
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.865
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.713
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.704
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.844
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.836
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.865
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.858
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.710
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.708
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.872
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.761
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.736
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.703
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.718
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.768
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.726
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.865
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.865
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.782
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.821
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.814
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.768
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.766
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.831
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.775
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.768
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.753
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.775
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.768
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.872
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.858
Gm8991 Mus musculus ENSMUSG00000059179 I 0.766
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.858
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.803
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.768
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.872
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.865
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.858
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.872
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.865
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.858
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.851
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.857
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.865
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.858
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.851
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.872
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.858
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.768
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.773
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.710
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.851
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.872
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.872
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.872
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.768
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.872
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.858
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.725
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.703
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.725
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.764
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.768
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.872
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.837
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.752
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.831
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.872
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.759
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.837
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.711
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.704
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.768
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.713
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.768
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.823
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.807
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.711
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.814
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.816
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.786
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.821
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.723
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.787
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.702
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.800
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.704
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.768
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.814
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.872
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.766
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.745
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.730
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.836
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.850
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.872
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.768
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.872
CBF67578 Xenopus laevis CBF67578 I 0.748
CBF67672 Xenopus laevis CBF67672 I 0.801
CBU92428 Xenopus laevis CBU92428 I 0.787
CBU92451 Xenopus laevis CBU92451 I 0.748
CBU92546 Xenopus laevis CBU92546 I 0.801
P17130 Xenopus laevis P17130 I 0.787
P51968 Xenopus laevis P51968 I 0.759
CBF67555 Xenopus laevis CBF67555 I 0.787
AAI69881 Xenopus laevis AAI69881 I 0.748
AAH72090 Xenopus laevis AAH72090 I 0.801
AAH45260 Xenopus laevis AAH45260 I 0.794
AAA49950 Xenopus laevis AAA49950 I 0.748
AAA49949 Xenopus laevis AAA49949 I 0.759
AAA49742 Xenopus laevis AAA49742 I 0.787
AAA49741 Xenopus laevis AAA49741 I 0.787
P51992 Xenopus laevis P51992 I 0.748
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.801
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.766