ENSCJAG00000008584 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000008584 T35554_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.843
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.843
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.843
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.829
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000015831 RRM 15 84
ENSCJAP00000015831 RRM 106 173
ENSCJAP00000017141 RRM 15 84
ENSCJAP00000017141 RRM 106 173

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

260 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29848.m004524 Ricinus communis 29848.m004524 N 0.000
AT5G10800 Arabidopsis thaliana AT5G10800-TAIR-G N 0.000
AT5G25060 Arabidopsis thaliana AT5G25060-TAIR-G N 0.000
BGIOSIBCE005866 Oryza indica BGIOSIBCE005866 N 0.000
BRADI3G05977 Brachypodium distachyon BRADI3G05977 N 0.000
BRADI3G31900 Brachypodium distachyon BRADI3G31900 N 0.000
cassava18379.valid.m1 Manihot esculenta cassava18379.valid.m1 N 0.000
cassava39930.m1 Manihot esculenta cassava39930.m1 N 0.000
cassava8085.valid.m1 Manihot esculenta cassava8085.valid.m1 N 0.000
Cucsa.162880 Cucumis sativus Cucsa.162880 N 0.000
estExt_fgenesh2_pg.C_1370031 Physcomitrella patens estExt_fgenesh2_pg.C_1370031 N 0.000
estExt_gwp_gw1.C_1960080 Physcomitrella patens estExt_gwp_gw1.C_1960080 N 0.000
e_gw1.7.796.1 Selaginella moellendorfii e_gw1.7.796.1 N 0.000
XM_002873431.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000838 N 0.000
Glyma08g34030.1 Glycine max Glyma08g34030.1 N 0.000
Glyma16g15820.1 Glycine max Glyma16g15820.1 N 0.000
GRMZM2G133308 Zea mays GRMZM2G133308 N 0.000
GRMZM2G174785 Zea mays GRMZM2G174785 N 0.000
GSVIVG00035985001 Vitis vinifera GSVIVG00035985001 N 0.000
LjB10M19.170.nd Lotus japonicus LjB10M19.170.nd N 0.000
LOC_Os02g08360 Oryza sativa LOC_Os02g08360 N 0.000
MDP0000266453 Malus x domestica MDP0000266453 N 0.000
Medtr8g083970 Medicago truncatula Medtr8g083970 N 0.000
mgf001511m Mimulus guttatus mgf001511m N 0.000
B9HB72_POPTR Populus trichocarpa POPTR_0006s28150 N 0.000
POPTR_0018s02740 Populus trichocarpa POPTR_0018s02740 N 0.000
ppa000894m Prunus persica ppa000894m N 0.000
SB04G005430 Sorghum bicolor Sb04g005430 N 0.000
XM_002874191.1 Arabidopsis lyrata scaffold_602605.1 N 0.000