cassava6633.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava6633.valid.m1 T49443_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava6633.valid.m1 RRM 18 79

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.735
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.765
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.721
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.721
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.710
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.735
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.721
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.721
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.735
mgf016660m Mimulus guttatus mgf016660m I 0.000
mgf017214m Mimulus guttatus mgf017214m I 0.765
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.887
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.903
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.935
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.935
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.735
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.779
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.000
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.000
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.721
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.839
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.791
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.000
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.000
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.791
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.000
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.000
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.000
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.000
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.000
MDP0000488395 Malus x domestica MDP0000488395 I 0.750
MDP0000548950 Malus x domestica MDP0000548950 I 0.765
MDP0000744398 Malus x domestica MDP0000744398 I 0.765
MDP0000857317 Malus x domestica MDP0000857317 I 0.000
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.871
ppa009564m Prunus persica ppa009564m I 0.968
ppa009716m Prunus persica ppa009716m I 0.735
ppa009964m Prunus persica ppa009964m I 0.000
ppa016222m Prunus persica ppa016222m I 0.750
ppa018603m Prunus persica ppa018603m I 0.710
ppa018926m Prunus persica ppa018926m I 0.000
MDP0000284454 Malus x domestica MDP0000284454 I 0.000
MDP0000233609 Malus x domestica MDP0000233609 I 0.000
MDP0000184420 Malus x domestica MDP0000184420 I 0.000
CU179634_3 Medicago truncatula CU179634_3 I 0.746
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.791
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.968
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.000
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.871
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.750
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.968
MDP0000118777 Malus x domestica MDP0000118777 I 0.000
MDP0000125082 Malus x domestica MDP0000125082 I 0.000
MDP0000134468 Malus x domestica MDP0000134468 I 0.000
MDP0000138486 Malus x domestica MDP0000138486 I 0.716
ppa019392m Prunus persica ppa019392m I 0.000
PK14266.1 Cannabis sativa PK14266.1 I 0.765
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.706
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.839
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.721
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.952
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.903
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.000
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.000
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.000
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.000
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.000
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.735
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.750
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.806
PK15672.1 Cannabis sativa PK15672.1 I 0.000
PK21213.1 Cannabis sativa PK21213.1 I 0.791
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.806
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.871
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.000
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.903
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.000
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.000
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.887
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.000
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.000
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.750
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.935
30076.m004440 Ricinus communis 30076.m004440 I 0.735
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 1.000
30170.m013735 Ricinus communis 30170.m013735 I 0.968
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.000
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.000
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.721
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.750
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.000
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.721
29983.m003293 Ricinus communis 29983.m003293 I 0.769
29923.m000811 Ricinus communis 29923.m000811 I 0.000
29908.m006046 Ricinus communis 29908.m006046 I 0.706
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.735
SB01G038700 Sorghum bicolor Sb01g038700 I 0.000
SB03G041530 Sorghum bicolor Sb03g041530 I 0.903
SB04G030020 Sorghum bicolor Sb04g030020 I 0.000
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.791
mgf002440m Mimulus guttatus mgf002440m N 0.855
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.000
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.903
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.000
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.823
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.000
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.952
MDP0000181802 Malus x domestica MDP0000181802 N 0.952
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.806
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.000
SB03G046430 Sorghum bicolor Sb03g046430 N 0.790
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.000
MDP0000271231 Malus x domestica MDP0000271231 N 0.952
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.790
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.806
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.000