Pabpc3 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000017367 T41116_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.932
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.932
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.932
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.885
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.824
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000023319 RRM 13 83
ENSRNOP00000023319 RRM 101 169
ENSRNOP00000023319 RRM 193 262
ENSRNOP00000023319 RRM 306 374

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.000
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.000
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.000
AAEL010318 Aedes aegypti AAEL010318 I 0.000
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.928
AGAP011092 Anopheles gambiae AGAP011092 I 0.707
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.707
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.707
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.707
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.717
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.828
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.703
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.703
CBN04295 Caenorhabditis brenneri CBN04295 I 0.000
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.932
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.821
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.828
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.932
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.721
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.832
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.703
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.703
pabpc4 Danio rerio ENSDARG00000059259 I 0.817
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.000
GF12652 Drosophila ananassae FBgn0089688 I 0.000
GG21846 Drosophila erecta FBgn0114024 I 0.000
GH21052 Drosophila grimshawi FBgn0128514 I 0.000
pAbp Drosophila melanogaster FBgn0261619 D 0.000
GI18654 Drosophila mojavensis FBgn0141393 I 0.000
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.000
GM21847 Drosophila sechellia FBgn0176724 I 0.000
GD11341 Drosophila simulans FBgn0183090 I 0.000
GJ21671 Drosophila virilis FBgn0208790 I 0.000
GK19652 Drosophila willistoni FBgn0221650 I 0.000
GE11925 Drosophila yakuba FBgn0229707 I 0.000
LOC100054235 Equus caballus ENSECAG00000009396 I 0.828
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.821
PABPC4 Gallus gallus ENSGALG00000003800 I 0.842
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.806
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.824
PABPC1 Homo sapiens ENSG00000070756 D 0.932
PABPC4 Homo sapiens ENSG00000090621 D 0.824
ISCW014211 Ixodes scapularis ISCW014211 I 0.708
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.000
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.000
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.828
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.932
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.932
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.828
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.828
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.921
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.832
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.817
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.928
Gm10110 Mus musculus ENSMUSG00000062093 I 0.821
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.000
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.000
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.000
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.000
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.932
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.828
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.928
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.839
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.832
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.932
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.932
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.806
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.928
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.824
PHUM617090 Pediculus humanus PHUM617090 I 0.703
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.824
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.932
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.932
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.828
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.928
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.000
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.000
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.932
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.828
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.832
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.928
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.810
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.806
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.932
P20965 Xenopus laevis P20965 I 0.882
CAA40721 Xenopus laevis CAA40721 I 0.882
AAI08463 Xenopus laevis AAI08463 I 0.889
AAH73435 Xenopus laevis AAH73435 I 0.849
AAH72110 Xenopus laevis AAH72110 I 0.889
AAH52100 Xenopus laevis AAH52100 I 0.882
AAA60936 Xenopus laevis AAA60936 I 0.878
Q6IP09 Xenopus laevis Q6IP09 I 0.889
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.903