cassava39418.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava39418.m1 T49372_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava39418.m1 RRM 26 93

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29908.m006046 Ricinus communis 29908.m006046 I 0.765
29923.m000811 Ricinus communis 29923.m000811 I 0.706
29983.m003293 Ricinus communis 29983.m003293 I 0.735
30076.m004440 Ricinus communis 30076.m004440 I 0.971
30170.m013735 Ricinus communis 30170.m013735 I 0.750
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.706
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.710
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.000
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.779
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.725
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.899
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.735
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.000
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.000
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.000
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.721
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.000
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.000
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.710
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.710
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.706
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.941
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.779
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.000
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.000
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.794
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.750
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.750
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.824
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.000
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.765
CU179634_3 Medicago truncatula CU179634_3 I 0.794
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.838
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.000
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.721
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.739
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.941
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.779
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.884
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.000
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.706
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.809
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.710
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.853
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.725
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.794
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.838
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.710
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.779
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.899
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.956
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.706
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.706
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.765
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.750
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.913
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.956
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.721
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.735
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.000
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.000
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.000
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.000
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.794
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.750
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.941
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.721
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.824
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.912
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.824
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.926
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.721
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.735
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.000
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.000
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.735
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.706
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.000
MDP0000118777 Malus x domestica MDP0000118777 I 0.812
MDP0000125082 Malus x domestica MDP0000125082 I 0.000
MDP0000134468 Malus x domestica MDP0000134468 I 0.794
MDP0000138486 Malus x domestica MDP0000138486 I 0.794
MDP0000181802 Malus x domestica MDP0000181802 N 0.706
MDP0000184420 Malus x domestica MDP0000184420 I 0.765
MDP0000233609 Malus x domestica MDP0000233609 I 0.765
MDP0000271231 Malus x domestica MDP0000271231 N 0.706
MDP0000284454 Malus x domestica MDP0000284454 I 0.765
MDP0000308970 Malus x domestica MDP0000308970 I 0.000
MDP0000488395 Malus x domestica MDP0000488395 I 0.971
MDP0000548950 Malus x domestica MDP0000548950 I 0.956
MDP0000744398 Malus x domestica MDP0000744398 I 0.956
MDP0000857317 Malus x domestica MDP0000857317 I 0.812
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.853
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.721
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.779
mgf002440m Mimulus guttatus mgf002440m N 0.000
mgf016660m Mimulus guttatus mgf016660m I 0.000
mgf017214m Mimulus guttatus mgf017214m I 0.824
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.735
PK14266.1 Cannabis sativa PK14266.1 I 0.941
PK15672.1 Cannabis sativa PK15672.1 I 0.783
PK21213.1 Cannabis sativa PK21213.1 I 0.809
PK29603.1 Cannabis sativa PK29603.1 I 0.000
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.824
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.783
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.956
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.809
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.000
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.706
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.721
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.985
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.706
ppa009564m Prunus persica ppa009564m I 0.721
ppa009964m Prunus persica ppa009964m I 0.794
ppa016222m Prunus persica ppa016222m I 0.941
ppa018603m Prunus persica ppa018603m I 0.855
ppa018926m Prunus persica ppa018926m I 0.768
ppa019392m Prunus persica ppa019392m I 0.768
ppa026384m Prunus persica ppa026384m I 0.000
SB01G038700 Sorghum bicolor Sb01g038700 I 0.000
SB03G041530 Sorghum bicolor Sb03g041530 I 0.735
SB03G046430 Sorghum bicolor Sb03g046430 N 0.000
SB04G030020 Sorghum bicolor Sb04g030020 I 0.000
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.735