PABPC1L (Meleagris gallopavo)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMGAG00000003674 T38341_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.864
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.864
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.864
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.824
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000003564 RRM 13 83
ENSMGAP00000003564 RRM 101 169
ENSMGAP00000003564 RRM 193 262
ENSMGAP00000003564 RRM 296 364

Links

Other RRM family RBPs
Other Meleagris gallopavo RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM23 Anolis carolinensis ENSACAG00000001569 N 0.000
Rbm39 Mus musculus ENSMUSG00000027620 N 0.000
RBM23 Oryctolagus cuniculus ENSOCUG00000002006 N 0.000
RBM23 Ochotona princeps ENSOPRG00000001092 N 0.000
RBM39 Ochotona princeps ENSOPRG00000002183 N 0.000
RBM23 Oryzias latipes ENSORLG00000010370 N 0.000
ENSPPYG00000005649 Pongo pygmaeus ENSPPYG00000005649 N 0.000
RBM23 Pan troglodytes ENSPTRG00000006151 N 0.000
RBM23 Pteropus vampyrus ENSPVAG00000013785 N 0.000
RBM23 Sorex araneus ENSSARG00000005165 N 0.000
RBM23 Spermophilus tridecemlineatus ENSSTOG00000010354 N 0.000
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.000
RBM23 Tarsius syrichta ENSTSYG00000014755 N 0.000
RBM23 Tursiops truncatus ENSTTRG00000001500 N 0.000
RBM23 Vicugna pacos ENSVPAG00000000599 N 0.000
RBM39 Vicugna pacos ENSVPAG00000003819 N 0.000
rbm23 Xenopus tropicalis ENSXETG00000022623 N 0.000
BGIBMGA006208 Bombyx mori BGIBMGA006208 N 0.000
RBM23 Monodelphis domestica ENSMODG00000024448 N 0.000
LOC710066 Macaca mulatta ENSMMUG00000018381 N 0.000
RBM23 Myotis lucifugus ENSMLUG00000012923 N 0.000
Q0IIK8_BOVIN Bos taurus ENSBTAG00000038333 N 0.000
RBM23 Canis familiaris ENSCAFG00000011217 N 0.000
RBM23 Choloepus hoffmanni ENSCHOG00000004460 N 0.000
RBM23 Callithrix jacchus ENSCJAG00000008482 N 0.000
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.000
RBM23 Dasypus novemcinctus ENSDNOG00000002569 N 0.000
ENSDORG00000004926 Dipodomys ordii ENSDORG00000004926 N 0.000
LOC100052786 Equus caballus ENSECAG00000009910 N 0.000
RBM39 Erinaceus europaeus ENSEEUG00000004390 N 0.000
RBM23 Erinaceus europaeus ENSEEUG00000015560 N 0.000
RBM23 Felis catus ENSFCAG00000006632 N 0.000
RBM23 Homo sapiens ENSG00000100461 N 0.000
RBM39 Homo sapiens ENSG00000131051 N 0.000
RBM23 Gorilla gorilla ENSGGOG00000015707 N 0.000
RBM23 Loxodonta africana ENSLAFG00000018567 N 0.000
RBM23 Macropus eugenii ENSMEUG00000014548 N 0.000
RBM23 Microcebus murinus ENSMICG00000006364 N 0.000
Ame_R014613 Ailuropoda melanoleuca Ame_R014613 N 0.000