CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC1L
(
Meleagris gallopavo
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMGAG00000003674
T38341_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.864
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.864
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.864
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.824
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.803
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000003564
RRM
13
83
LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPVR
ENSMGAP00000003564
RRM
101
169
VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIETMNGMLLNDRKVF
ENSMGAP00000003564
RRM
193
262
VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVY
ENSMGAP00000003564
RRM
296
364
LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY
Links
Other
RRM
family RBPs
Other
Meleagris gallopavo
RBPs
153 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM23
Anolis carolinensis
ENSACAG00000001569
N
0.000
Rbm39
Mus musculus
ENSMUSG00000027620
N
0.000
RBM23
Oryctolagus cuniculus
ENSOCUG00000002006
N
0.000
RBM23
Ochotona princeps
ENSOPRG00000001092
N
0.000
RBM39
Ochotona princeps
ENSOPRG00000002183
N
0.000
RBM23
Oryzias latipes
ENSORLG00000010370
N
0.000
ENSPPYG00000005649
Pongo pygmaeus
ENSPPYG00000005649
N
0.000
RBM23
Pan troglodytes
ENSPTRG00000006151
N
0.000
RBM23
Pteropus vampyrus
ENSPVAG00000013785
N
0.000
RBM23
Sorex araneus
ENSSARG00000005165
N
0.000
RBM23
Spermophilus tridecemlineatus
ENSSTOG00000010354
N
0.000
RBM23
Takifugu rubripes
ENSTRUG00000011352
N
0.000
RBM23
Tarsius syrichta
ENSTSYG00000014755
N
0.000
RBM23
Tursiops truncatus
ENSTTRG00000001500
N
0.000
RBM23
Vicugna pacos
ENSVPAG00000000599
N
0.000
RBM39
Vicugna pacos
ENSVPAG00000003819
N
0.000
rbm23
Xenopus tropicalis
ENSXETG00000022623
N
0.000
BGIBMGA006208
Bombyx mori
BGIBMGA006208
N
0.000
RBM23
Monodelphis domestica
ENSMODG00000024448
N
0.000
LOC710066
Macaca mulatta
ENSMMUG00000018381
N
0.000
RBM23
Myotis lucifugus
ENSMLUG00000012923
N
0.000
Q0IIK8_BOVIN
Bos taurus
ENSBTAG00000038333
N
0.000
RBM23
Canis familiaris
ENSCAFG00000011217
N
0.000
RBM23
Choloepus hoffmanni
ENSCHOG00000004460
N
0.000
RBM23
Callithrix jacchus
ENSCJAG00000008482
N
0.000
B0KWM7_CALJA
Callithrix jacchus
ENSCJAG00000017535
N
0.000
RBM23
Dasypus novemcinctus
ENSDNOG00000002569
N
0.000
ENSDORG00000004926
Dipodomys ordii
ENSDORG00000004926
N
0.000
LOC100052786
Equus caballus
ENSECAG00000009910
N
0.000
RBM39
Erinaceus europaeus
ENSEEUG00000004390
N
0.000
RBM23
Erinaceus europaeus
ENSEEUG00000015560
N
0.000
RBM23
Felis catus
ENSFCAG00000006632
N
0.000
RBM23
Homo sapiens
ENSG00000100461
N
0.000
RBM39
Homo sapiens
ENSG00000131051
N
0.000
RBM23
Gorilla gorilla
ENSGGOG00000015707
N
0.000
RBM23
Loxodonta africana
ENSLAFG00000018567
N
0.000
RBM23
Macropus eugenii
ENSMEUG00000014548
N
0.000
RBM23
Microcebus murinus
ENSMICG00000006364
N
0.000
Ame_R014613
Ailuropoda melanoleuca
Ame_R014613
N
0.000