CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIA1
(
Otolemur garnettii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOGAG00000010572
T39870_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
TIA1
M156_0.6
Homo sapiens
WUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00165
1.000
TIA1
M075_0.6
Homo sapiens
UUUUUBK
RNAcompete
Ray et al.(2013)
RNCMPT00077
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000009465
RRM
9
77
LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVK
ENSOGAP00000009465
RRM
108
178
VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR
ENSOGAP00000009465
RRM
216
280
VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK
Links
Other
RRM
family RBPs
Other
Otolemur garnettii
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
JSN1
Saccharomyces cerevisiae
YJR091C
N
0.000
SAKL0F14102g
Lachancea kluyveri
SAKL0F14102g
N
0.000
KLTH0F07524g
Kluyveromyces thermotolerans
KLTH0F07524g
N
0.000
KLLA0E06029g
Kluyveromyces lactis
KLLA0E06029g
N
0.000
CAGL0M09108g
Candida glabrata
CAGL0M09108g
N
0.000
A7TM89_VANPO
Vanderwaltozyma polyspora
A7TM89_VANPO
N
0.000
A7TIG6_VANPO
Vanderwaltozyma polyspora
A7TIG6_VANPO
N
0.000
12964_YJR091C
Saccharomyces bayanus
12964_YJR091C
N
0.000
12627_YJR091C
Saccharomyces paradoxus
12627_YJR091C
N
0.000
12521_YJR091C
Saccharomyces mikatae
12521_YJR091C
N
0.000
Scas_Contig674.27
Saccharomyces castellii
Scas_Contig674.27
N
0.000
ZYRO0G17446g
Zygosaccharomyces rouxii
ZYRO0G17446g
N
0.000