LOC_Os07g07490 (Oryza sativa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 LOC_Os07g07490 T62232_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os07g07490.1 YTH 402 492
LOC_Os07g07490.2 YTH 402 492

Links

Other YTH family RBPs
Other Oryza sativa RBPs

144 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.813
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.824
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.824
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.824
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.824
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.824
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.835
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.736
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.769
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.758
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.714
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.747
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.714
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.824
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.824
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.813
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.813
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.703
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.703
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.813
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.813
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.780
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.813
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.813
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.813
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.824
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.824
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.824
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.824
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.824
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.747
mgf009938m Mimulus guttatus mgf009938m N 0.835
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.703
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.703
MDP0000488588 Malus x domestica MDP0000488588 N 0.857
MDP0000552419 Malus x domestica MDP0000552419 N 0.703
MDP0000617859 Malus x domestica MDP0000617859 N 0.703
MDP0000718677 Malus x domestica MDP0000718677 N 0.857
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.813
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
ppa002483m Prunus persica ppa002483m N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
ppa003664m Prunus persica ppa003664m N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
MDP0000129009 Malus x domestica MDP0000129009 N 0.846
mgf013853m Mimulus guttatus mgf013853m N 0.835
mgf013935m Mimulus guttatus mgf013935m N 0.835
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.780
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.780
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.956
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.802
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.791
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.736
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.736
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.758
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.835
ppa018635m Prunus persica ppa018635m N 0.703
PK17832.1 Cannabis sativa PK17832.1 N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.769
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.769
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.824
XM_002892481.1 Arabidopsis lyrata fgenesh2_kg.1__1037__AT1G09810.1 N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.736
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.736
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.813
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.780
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.824
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.824
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.758
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.879
PK23716.1 Cannabis sativa PK23716.1 N 0.835
ECT11 Arabidopsis thaliana AT1G09810-TAIR-G N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.802
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.736
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.791
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.736
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.813
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.824
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 1.000
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.703
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.835
SB01G005500 Sorghum bicolor Sb01g005500 N 0.868
SB01G008170 Sorghum bicolor Sb01g008170 N 0.780
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.802
SB02G003990 Sorghum bicolor Sb02g003990 N 0.945
SB06G027960 Sorghum bicolor Sb06g027960 N 0.703
SB07G006330 Sorghum bicolor Sb07g006330 N 0.736
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
29890.m000285 Ricinus communis 29890.m000285 N 0.703
29929.m004643 Ricinus communis 29929.m004643 N 0.703
29950.m001140 Ricinus communis 29950.m001140 N 0.780
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.813
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.813
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.813
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.813
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.813
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.758
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.714
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.703
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.835
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714