CELF4 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000021352 T38098_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.882
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.879
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.871
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.848
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000017554 RRM 56 125
ENSLAFP00000017554 RRM 153 221
ENSLAFP00000017554 RRM 421 491
ENSLAFP00000019479 RRM 5 73
ENSLAFP00000019479 RRM 253 323

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

151 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62054 Helobdella robusta 62054 I 0.793
90208 Helobdella robusta 90208 I 0.787
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.993
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.929
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.781
AAA81375 Xenopus laevis AAA81375 I 0.867
AAEL014033 Aedes aegypti AAEL014033 I 0.879
AAH46942 Xenopus laevis AAH46942 I 0.862
AAH57704 Xenopus laevis AAH57704 I 0.867
AAH72134 Xenopus laevis AAH72134 I 0.867
ACH69784 Xenopus laevis ACH69784 I 0.886
ACH69785 Xenopus laevis ACH69785 I 0.871
AGAP004950 Anopheles gambiae AGAP004950 I 0.879
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.900
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.810
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.848
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.881
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.810
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.707
Bm1_27610 Brugia malayi Bm1_27610 I 0.790
bru-3 Drosophila melanogaster FBgn0262350 D 0.879
BRUNOL4 Homo sapiens ENSG00000101489 D 0.886
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.993
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.993
BRUNOL5 Homo sapiens ENSG00000161082 D 0.871
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.729
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.852
BRUNOL6 Homo sapiens ENSG00000140488 D 0.848
CBG15358 Caenorhabditis briggsae CBG15358 I 0.768
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.714
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.714
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.810
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.781
CELF3 Oryzias latipes ENSORLG00000010447 I 0.817
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.729
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.810
CELF3 Sus scrofa ENSSSCG00000006618 I 0.795
CELF3 Procavia capensis ENSPCAG00000001623 I 0.786
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.810
Celf3 Mus musculus ENSMUSG00000028137 I 0.810
CELF3 Oryzias latipes ENSORLG00000002630 I 0.730
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.724
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.867
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.843
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.848
CELF3 Danio rerio ENSDARG00000006983 I 0.824
CELF3 Canis familiaris ENSCAFG00000012794 I 0.810
celf3 Danio rerio ENSDARG00000034668 I 0.857
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.810
CELF3 Homo sapiens ENSG00000159409 I 0.810
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.862
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.810
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.867
CELF3 Equus caballus ENSECAG00000020365 I 0.810
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.810
CELF4 Monodelphis domestica ENSMODG00000000306 N 0.700
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.886
CELF4 Macaca mulatta ENSMMUG00000006866 I 0.763
Celf4 Mus musculus ENSMUSG00000024268 I 0.995
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.882
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 1.000
CELF4 Oryzias latipes ENSORLG00000008913 I 0.952
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.844
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.739
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.886
CELF4 Tupaia belangeri ENSTBEG00000010647 I 0.702
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.806
CELF4 Sus scrofa ENSSSCG00000003748 N 0.702
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.929
celf4 Danio rerio ENSDARG00000070045 I 0.757
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.995
CELF5 Oryzias latipes ENSORLG00000004600 I 0.886
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.862
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.843
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.710
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.729
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.886
CELF5 Sus scrofa ENSSSCG00000013476 I 0.706
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.710
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.886
CELF5 Bos taurus ENSBTAG00000021774 I 0.701
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.900
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.893
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.893
celf5 Danio rerio ENSDARG00000071375 I 0.890
CELF5 Canis familiaris ENSCAFG00000019263 I 0.714
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.872
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.879
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.758
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.857
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.707
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.900
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.848
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.914
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.776
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.757
CELF6 Felis catus ENSFCAG00000016249 I 0.848
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.914
CELF6 Oryzias latipes ENSORLG00000013392 I 0.921
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.833
CELF6 Bos taurus ENSBTAG00000014092 I 0.848
Celf6 Mus musculus ENSMUSG00000032297 I 0.852
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.848
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.919
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.830
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.936
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.852
CELF6 Sus scrofa ENSSSCG00000001928 I 0.848
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.836
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.722
CJA07020 Caenorhabditis japonica CJA07020 I 0.757
CRE09771 Caenorhabditis remanei CRE09771 I 0.768
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.810
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.735
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.725
ENSDARG00000076682 Danio rerio ENSDARG00000076682 I 0.731
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.700
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.810
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.807
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.843
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.891
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.800
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.700
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.862
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.871
GD12651 Drosophila simulans FBgn0184378 I 0.879
GE20053 Drosophila yakuba FBgn0237378 I 0.879
GF10965 Drosophila ananassae FBgn0088005 I 0.879
GG13757 Drosophila erecta FBgn0106020 I 0.879
GH14684 Drosophila grimshawi FBgn0122160 I 0.871
GI13095 Drosophila mojavensis FBgn0135852 I 0.871
GJ13842 Drosophila virilis FBgn0201061 I 0.871
GK17101 Drosophila willistoni FBgn0219100 I 0.879
GL21647 Drosophila persimilis FBgn0159240 I 0.850
GM24582 Drosophila sechellia FBgn0179445 I 0.879
HEXA Macaca mulatta ENSMMUG00000010687 I 0.848
LOAG_05508 Loa loa LOAG_05508 I 0.800
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.886
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.714
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.848
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.864
PHUM315130 Pediculus humanus PHUM315130 I 0.907
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.714
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.862
Q91579 Xenopus laevis Q91579 I 0.867
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.757
Smp_041280 Schistosoma mansoni Smp_041280 I 0.829
Smp_131780 Schistosoma mansoni Smp_131780 I 0.757
unc-75 Caenorhabditis elegans C17D12.2 D 0.754
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.741
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.741