PABPC1L (Meleagris gallopavo)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMGAG00000003674 T38341_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.864
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.864
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.864
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.824
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000003564 RRM 13 83
ENSMGAP00000003564 RRM 101 169
ENSMGAP00000003564 RRM 193 262
ENSMGAP00000003564 RRM 296 364

Links

Other RRM family RBPs
Other Meleagris gallopavo RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.824
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.821
AAA60936 Xenopus laevis AAA60936 I 0.846
AAEL010318 Aedes aegypti AAEL010318 I 0.714
AAH52100 Xenopus laevis AAH52100 I 0.849
AAH71118 Xenopus laevis AAH71118 I 0.910
AAH72110 Xenopus laevis AAH72110 I 0.846
AAH73435 Xenopus laevis AAH73435 I 0.835
AAH80020 Xenopus laevis AAH80020 I 0.900
AAI08463 Xenopus laevis AAI08463 I 0.846
AAK29408 Xenopus laevis AAK29408 I 0.900
AGAP011092 Anopheles gambiae AGAP011092 I 0.710
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.717
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.717
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.717
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.846
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.857
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.763
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.701
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.717
CAA40721 Xenopus laevis CAA40721 I 0.849
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.717
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.717
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.806
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.824
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.703
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.796
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.867
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.864
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.721
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.721
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.835
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.864
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.824
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.728
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.792
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.867
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.849
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.864
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.864
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.864
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.839
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.824
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.824
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.839
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.864
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.864
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.864
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.846
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.842
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.842
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.864
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.724
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.717
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.718
Gm10110 Mus musculus ENSMUSG00000062093 I 0.817
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.717
ISCW014211 Ixodes scapularis ISCW014211 I 0.715
LOC100054235 Equus caballus ENSECAG00000009396 I 0.824
LOC100056021 Equus caballus ENSECAG00000020699 I 0.746
LOC100070836 Equus caballus ENSECAG00000022681 I 0.842
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.835
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.864
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.714
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.714
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.714
P20965 Xenopus laevis P20965 I 0.849
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.867
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.867
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.860
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.867
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.864
PABPC1 Homo sapiens ENSG00000070756 D 0.864
pabpc1a Danio rerio ENSDARG00000017219 I 0.853
pabpc1b Danio rerio ENSDARG00000021140 I 0.836
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.824
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.792
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.824
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.839
PABPC1L Homo sapiens ENSG00000101104 I 0.839
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.817
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.828
PABPC1L Bos taurus ENSBTAG00000016849 I 0.853
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.849
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.914
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.760
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.849
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.832
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.821
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.918
pabpc1l Danio rerio ENSDARG00000002597 I 0.839
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.767
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.842
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.842
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.842
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.853
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.857
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.878
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.806
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.728
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.889
PABPC1L Gallus gallus ENSGALG00000004123 I 0.993
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.849
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.839
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.789
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.824
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.846
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.839
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.842
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.860
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.864
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.824
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.821
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.825
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.860
PABPC3 Homo sapiens ENSG00000151846 D 0.803
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.821
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.778
PABPC4 Gallus gallus ENSGALG00000003800 I 0.853
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.824
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.828
pabpc4 Danio rerio ENSDARG00000059259 I 0.828
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.828
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.824
PABPC4 Homo sapiens ENSG00000090621 D 0.824
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.821
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.824
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.824
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.814
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.821
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.824
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.703
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.824
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.824
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.810
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.738
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.846
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.814
PHUM617090 Pediculus humanus PHUM617090 I 0.717
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.701
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.806
Q6GR16 Xenopus laevis Q6GR16 I 0.910
Q6IP09 Xenopus laevis Q6IP09 I 0.846
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.832
Q98SP8 Xenopus laevis Q98SP8 I 0.900
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.839
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.835
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.774
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.710
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.708
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.708
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.860
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.861