CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC1L
(
Meleagris gallopavo
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMGAG00000003674
T38341_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.864
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.864
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.864
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.824
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.803
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000003564
RRM
13
83
LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPVR
ENSMGAP00000003564
RRM
101
169
VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIETMNGMLLNDRKVF
ENSMGAP00000003564
RRM
193
262
VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVY
ENSMGAP00000003564
RRM
296
364
LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY
Links
Other
RRM
family RBPs
Other
Meleagris gallopavo
RBPs
153 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R005385
Ailuropoda melanoleuca
Ame_R005385
I
0.000
ENSBTAG00000026909
Bos taurus
ENSBTAG00000026909
I
0.000
ENSETEG00000014756
Echinops telfairi
ENSETEG00000014756
I
0.000
ENSETEG00000018937
Echinops telfairi
ENSETEG00000018937
I
0.000
ENSPPYG00000013265
Pongo pygmaeus
ENSPPYG00000013265
I
0.000
ENSRNOG00000008664
Rattus norvegicus
ENSRNOG00000008664
I
0.000
ENSSSCG00000016275
Sus scrofa
ENSSSCG00000016275
I
0.000
LOC100395223
Callithrix jacchus
ENSCJAG00000013538
I
0.000
NCL
Ornithorhynchus anatinus
ENSOANG00000008732
I
0.000
NCL
Oryctolagus cuniculus
ENSOCUG00000004312
I
0.000
NCL
Pan troglodytes
ENSPTRG00000013025
I
0.000
NCL
Pteropus vampyrus
ENSPVAG00000000297
I
0.000
NCL
Tursiops truncatus
ENSTTRG00000009094
I
0.000
ncl
Xenopus tropicalis
ENSXETG00000009517
N
0.000
Ncl
Rattus norvegicus
ENSRNOG00000018273
I
0.000
NCL
Taeniopygia guttata
ENSTGUG00000009782
N
0.000
NCL
Tarsius syrichta
ENSTSYG00000004355
I
0.000
Ncl
Mus musculus
ENSMUSG00000026234
I
0.000
NCL
Monodelphis domestica
ENSMODG00000002470
I
0.000
NCL
Macaca mulatta
ENSMMUG00000018094
I
0.000
NCL
Bos taurus
ENSBTAG00000016174
I
0.000
NCL
Canis familiaris
ENSCAFG00000011037
I
0.000
NCL
Cavia porcellus
ENSCPOG00000001034
I
0.000
Ncl
Dipodomys ordii
ENSDORG00000012513
I
0.000
NCL
Erinaceus europaeus
ENSEEUG00000005913
I
0.000
NCL
Homo sapiens
ENSG00000115053
D
0.000
NCL
Gorilla gorilla
ENSGGOG00000004300
I
0.000
NCL
Macropus eugenii
ENSMEUG00000012335
I
0.000
NCL
Meleagris gallopavo
ENSMGAG00000008147
I
0.000
NCL
Microcebus murinus
ENSMICG00000002538
I
0.000
NCL
Anolis carolinensis
ENSACAG00000001006
N
0.000
NUCL_CHICK
Gallus gallus
ENSGALG00000007705
I
0.000
Q6X9Z0_HORSE
Equus caballus
ENSECAG00000021868
I
0.000