PABPC1L (Meleagris gallopavo)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMGAG00000003674 T38341_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.864
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.864
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.864
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.824
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000003564 RRM 13 83
ENSMGAP00000003564 RRM 101 169
ENSMGAP00000003564 RRM 193 262
ENSMGAP00000003564 RRM 296 364

Links

Other RRM family RBPs
Other Meleagris gallopavo RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.000
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.000
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.000
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.000
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.000
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.000
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.000
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.000
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.000
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.000
NCL Pan troglodytes ENSPTRG00000013025 I 0.000
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.000
NCL Tursiops truncatus ENSTTRG00000009094 I 0.000
ncl Xenopus tropicalis ENSXETG00000009517 N 0.000
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.000
NCL Taeniopygia guttata ENSTGUG00000009782 N 0.000
NCL Tarsius syrichta ENSTSYG00000004355 I 0.000
Ncl Mus musculus ENSMUSG00000026234 I 0.000
NCL Monodelphis domestica ENSMODG00000002470 I 0.000
NCL Macaca mulatta ENSMMUG00000018094 I 0.000
NCL Bos taurus ENSBTAG00000016174 I 0.000
NCL Canis familiaris ENSCAFG00000011037 I 0.000
NCL Cavia porcellus ENSCPOG00000001034 I 0.000
Ncl Dipodomys ordii ENSDORG00000012513 I 0.000
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.000
NCL Homo sapiens ENSG00000115053 D 0.000
NCL Gorilla gorilla ENSGGOG00000004300 I 0.000
NCL Macropus eugenii ENSMEUG00000012335 I 0.000
NCL Meleagris gallopavo ENSMGAG00000008147 I 0.000
NCL Microcebus murinus ENSMICG00000002538 I 0.000
NCL Anolis carolinensis ENSACAG00000001006 N 0.000
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.000
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.000