LOC_Os03g06240 (Oryza sativa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 LOC_Os03g06240 T62226_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g06240.1 YTH 515 605
LOC_Os03g06240.2 YTH 514 604

Links

Other YTH family RBPs
Other Oryza sativa RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29889.m003364 Ricinus communis 29889.m003364 N 0.703
29950.m001140 Ricinus communis 29950.m001140 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.725
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.758
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.769
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.714
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 1.000
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.758
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.802
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.923
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.736
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.824
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.791
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.791
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.791
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.791
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.780
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.780
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.780
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.703
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.703
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.780
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.780
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.747
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.769
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.769
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.769
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.780
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.780
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.780
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.780
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.780
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.780
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.780
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.780
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.780
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.780
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.780
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.780
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.725
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.725
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.802
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.703
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.791
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.747
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.758
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.725
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.703
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.769
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.758
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.703
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.703
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.714
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.714
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.714
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.923
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.835
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.725
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.780
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.923
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.824
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.747
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.813
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.758
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
MDP0000124048 Malus x domestica MDP0000124048 N 0.747
MDP0000129009 Malus x domestica MDP0000129009 N 0.769
MDP0000132385 Malus x domestica MDP0000132385 N 0.703
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.747
MDP0000248088 Malus x domestica MDP0000248088 N 0.703
MDP0000286471 Malus x domestica MDP0000286471 N 0.747
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.703
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.747
MDP0000552419 Malus x domestica MDP0000552419 N 0.703
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.780
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.780
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.714
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.714
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.736
mgf009938m Mimulus guttatus mgf009938m N 0.813
mgf013853m Mimulus guttatus mgf013853m N 0.813
mgf013935m Mimulus guttatus mgf013935m N 0.780
mgf019846m Mimulus guttatus mgf019846m N 0.703
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.791
PK02315.1 Cannabis sativa PK02315.1 N 0.703
PK23104.1 Cannabis sativa PK23104.1 N 0.703
PK23716.1 Cannabis sativa PK23716.1 N 0.791
ppa002483m Prunus persica ppa002483m N 0.703
ppa002588m Prunus persica ppa002588m N 0.703
ppa003664m Prunus persica ppa003664m N 0.747
ppa018635m Prunus persica ppa018635m N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.791
SB01G008170 Sorghum bicolor Sb01g008170 N 0.846
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.923
SB02G003990 Sorghum bicolor Sb02g003990 N 0.758
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
SB07G006330 Sorghum bicolor Sb07g006330 N 0.747
SB07G024500 Sorghum bicolor Sb07g024500 N 0.747
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.736
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.725
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.791
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.725
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.780