LOC_Os05g01520 (Oryza sativa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 LOC_Os05g01520 T62231_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g01520.1 YTH 486 576

Links

Other YTH family RBPs
Other Oryza sativa RBPs

132 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29765.m000746 Ricinus communis 29765.m000746 N 0.758
29889.m003364 Ricinus communis 29889.m003364 N 0.725
29955.m001158 Ricinus communis 29955.m001158 N 0.736
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.703
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.714
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.714
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.736
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.725
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.725
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.780
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.758
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.736
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.846
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 1.000
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.736
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.736
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.725
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.901
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.736
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.890
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.736
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.736
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.736
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.736
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.780
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.780
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.780
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.780
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.714
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.714
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.714
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.714
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.714
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.736
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.736
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.736
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.736
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.736
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.736
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.736
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.736
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.736
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.736
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.736
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.736
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.736
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.736
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.736
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.758
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.736
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.736
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.736
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.703
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.703
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.703
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.725
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.714
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.714
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.725
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.703
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.747
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.736
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.736
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.835
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.758
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.758
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.725
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.725
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.703
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.707
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.728
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.736
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.736
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.846
MDP0000129009 Malus x domestica MDP0000129009 N 0.725
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.747
MDP0000231231 Malus x domestica MDP0000231231 N 0.703
MDP0000256033 Malus x domestica MDP0000256033 N 0.747
MDP0000286471 Malus x domestica MDP0000286471 N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
MDP0000488248 Malus x domestica MDP0000488248 N 0.725
MDP0000718677 Malus x domestica MDP0000718677 N 0.725
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.780
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.747
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.714
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
mgf001716m Mimulus guttatus mgf001716m N 0.747
mgf009938m Mimulus guttatus mgf009938m N 0.725
mgf013853m Mimulus guttatus mgf013853m N 0.725
mgf013935m Mimulus guttatus mgf013935m N 0.703
mgf014143m Mimulus guttatus mgf014143m N 0.714
mgf014829m Mimulus guttatus mgf014829m N 0.747
mgf015583m Mimulus guttatus mgf015583m N 0.714
mgf017987m Mimulus guttatus mgf017987m N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.725
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.725
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
PK23716.1 Cannabis sativa PK23716.1 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.747
ppa003557m Prunus persica ppa003557m N 0.747
ppa003664m Prunus persica ppa003664m N 0.714
ppa018635m Prunus persica ppa018635m N 0.747
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
SB01G008170 Sorghum bicolor Sb01g008170 N 0.736
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.835
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.703
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725