CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os05g01520
(
Oryza sativa
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
LOC_Os05g01520
T62231_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os05g01520.1
YTH
486
576
LFFSVNTSGQFVGLAEMLGPVDFKKTMDFWQQDKWNGFFPVMWHIIKDIPNRFFKHITLENNEGKVVTFSRDTQEIGLPQGLEMLKIFKAY
Links
Other
YTH
family RBPs
Other
Oryza sativa
RBPs
132 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG7903
Drosophila melanogaster
FBgn0039730
D
0.000
GE10405
Drosophila yakuba
FBgn0228270
I
0.000
GF16214
Drosophila ananassae
FBgn0093236
N
0.000
GK14083
Drosophila willistoni
FBgn0216089
N
0.000
GM12198
Drosophila sechellia
FBgn0167135
I
0.000